Package fi.luomus.commons.xml

Examples of fi.luomus.commons.xml.Document$Attribute


      dims.add( sDim);

      Structure dist = new Structure(ncfile, null, null, cname);
      dist.setDimensions(dims);
      ncfile.addVariable(null, dist);
      dist.addAttribute( new Attribute("long_name", "Wind Barb Data"));

      Variable value = new Variable(ncfile, null, dist, "value");
      value.setDimensions((String)null);
      value.setDataType(DataType.SHORT);
      value.addAttribute( new Attribute("units", "RMS"));
      dist.addMemberVariable(value);
      Variable i0 = new Variable(ncfile, null, dist, "x_start");
      i0.setDimensions((String)null);
      i0.setDataType(DataType.SHORT);
      i0.addAttribute( new Attribute("units", "KM"));
      dist.addMemberVariable(i0);
      Variable j0 = new Variable(ncfile, null, dist, "y_start");
      j0.setDimensions((String)null);
      j0.setDataType(DataType.SHORT);
      j0.addAttribute( new Attribute("units", "KM"));
      dist.addMemberVariable(j0);
      Variable direct = new Variable(ncfile, null, dist, "direction");
      direct.setDimensions((String)null);
      direct.setDataType(DataType.SHORT);
      direct.addAttribute( new Attribute("units", "degree"));
      dist.addMemberVariable(direct);
      Variable speed = new Variable(ncfile, null, dist, "speed");
      speed.setDimensions((String)null);
      speed.setDataType(DataType.SHORT);
      speed.addAttribute( new Attribute("units", "knots"));
      dist.addMemberVariable(speed);

      int[] pos1 = new int[len];
      System.arraycopy(pos, 0, pos1, 0, len);
      dist.setSPobject( new Vinfo (0, 0, 0, 0, hoff, 0, isR, isZ, pos1, null, 4, 0));
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      dims.add( sDim);

      Structure dist = new Structure(ncfile, null, null, "vectorArrow");
      dist.setDimensions(dims);
      ncfile.addVariable(null, dist);
      dist.addAttribute( new Attribute("long_name", "Vector Arrow Data"));

      Variable i0 = new Variable(ncfile, null, dist, "x_start");
      i0.setDimensions((String)null);
      i0.setDataType(DataType.SHORT);
      i0.addAttribute( new Attribute("units", "KM"));
      dist.addMemberVariable(i0);
      Variable j0 = new Variable(ncfile, null, dist, "y_start");
      j0.setDimensions((String)null);
      j0.setDataType(DataType.SHORT);
      j0.addAttribute( new Attribute("units", "KM"));
      dist.addMemberVariable(j0);
      Variable direct = new Variable(ncfile, null, dist, "direction");
      direct.setDimensions((String)null);
      direct.setDataType(DataType.SHORT);
      direct.addAttribute( new Attribute("units", "degree"));
      dist.addMemberVariable(direct);
      Variable speed = new Variable(ncfile, null, dist, "arrowLength");
      speed.setDimensions((String)null);
      speed.setDataType(DataType.SHORT);
      speed.addAttribute( new Attribute("units", "pixels"));
      dist.addMemberVariable(speed);
      Variable speed1 = new Variable(ncfile, null, dist, "arrowHeadLength");
      speed1.setDimensions((String)null);
      speed1.setDataType(DataType.SHORT);
      speed1.addAttribute( new Attribute("units", "pixels"));
      dist.addMemberVariable(speed1);

      int[] pos1 = new int[len];
      System.arraycopy(pos, 0, pos1, 0, len);
      dist.setSPobject( new Vinfo (0, 0, 0, 0, hoff, 0, isR, isZ, pos1, null, 4, 0));
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        dims.add( sDim);

        Structure dist = new Structure(ncfile, null, null, structName + abbre);
        dist.setDimensions(dims);
        ncfile.addVariable(null, dist);
        dist.addAttribute( new Attribute("long_name", "text and special symbol for code "+code));

        if(code == 8){
            Variable strVal = new Variable(ncfile, null, dist, "strValue");
            strVal.setDimensions((String)null);
            strVal.setDataType(DataType.SHORT);
            strVal.addAttribute( new Attribute("units", ""));
            dist.addMemberVariable(strVal);
        }
        Variable i0 = new Variable(ncfile, null, dist, "x_start");
        i0.setDimensions((String)null);
        i0.setDataType(DataType.SHORT);
        i0.addAttribute( new Attribute("units", "KM"));
        dist.addMemberVariable(i0);
        Variable j0 = new Variable(ncfile, null, dist, "y_start");
        j0.setDimensions((String)null);
        j0.setDataType(DataType.SHORT);
        j0.addAttribute( new Attribute("units", "KM"));
        dist.addMemberVariable(j0);
        Variable tstr = new Variable(ncfile, null, dist, "textString" );
        tstr.setDimensions((String)null);
        tstr.setDataType(DataType.STRING);
        tstr.addAttribute( new Attribute("units", ""));
        dist.addMemberVariable(tstr);

        int[] pos1 = new int[len];
        System.arraycopy(pos, 0, pos1, 0, len);
        dist.setSPobject( new Vinfo ( 0, 0, 0, 0, hoff, 0, isR, isZ, pos1, size, code, 0));
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        dims.add( sDim);

        Structure dist = new Structure(ncfile, null, null, "unlinkedVectorStruct");
        dist.setDimensions(dims);
        ncfile.addVariable(null, dist);
        dist.addAttribute( new Attribute("long_name", "Unlinked Vector Packet"));

        v = new Variable(ncfile, null, null, "iValue");
        v.setDataType(DataType.SHORT);
        v.setDimensions((String)null);
        dist.addMemberVariable(v);
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             dims.add( iDim);
            Variable v = new Variable(ncfile, null, null, cname+"_"+slayer);
            v.setDataType(DataType.SHORT);
            v.setDimensions(dims);
            ncfile.addVariable(null, v);
            v.addAttribute( new Attribute("long_name", ctitle+" at Symbology Layer "+ slayer));
            v.setSPobject( new Vinfo (numX, numX0, numY, numY0, hoff, hedsiz, isR, isZ, null, null, code, 0));
            v.addAttribute( new Attribute("units", cunit));
            v.addAttribute( new Attribute("missing_value", 255));

        } //else  if(slayer == 1) {
          //  ncfile.addDimension( null, iDim);
          //  ncfile.addDimension( null, jDim);
        //}

        for (int row=0; row < numRow; row++) {

            int runLen = bos.getShort();

            byte[] rdata = new byte[runLen];
            bos.get(rdata, 0, runLen);
            if (runLen < 2) {
                return soff;
            } else {
                soff += runLen + 2;
            }
        }   //end of for loop

        if(slayer == 0){
            double ddx = code_reslookup( pcode );
            ncfile.addAttribute(null, new Attribute("cdm_data_type", FeatureType.GRID.toString()));
            String coordinates = "x y time latitude longitude altitude";
            // create coordinate variables
            Variable xaxis = new Variable( ncfile, null, null, "x");
            xaxis.setDataType( DataType.DOUBLE);
            xaxis.setDimensions("x");
            xaxis.addAttribute( new Attribute("long_name", "projection x coordinate"));
            xaxis.addAttribute( new Attribute("units", "km"));
            xaxis.addAttribute( new Attribute(_Coordinate.AxisType, "GeoX"));
            double[] data1 = new double[numX];
            for (int i = 0; i < numX; i++)
              data1[i] = (double) (numX0 + i*ddx);
            Array dataA = Array.factory(DataType.DOUBLE.getPrimitiveClassType(), new int[] {numX}, data1);
            xaxis.setCachedData( dataA, false);
            ncfile.addVariable(null, xaxis);

            Variable yaxis = new Variable( ncfile, null, null, "y");
            yaxis.setDataType( DataType.DOUBLE);
            yaxis.setDimensions( "y");
            yaxis.addAttribute( new Attribute("long_name", "projection y coordinate"));
            yaxis.addAttribute( new Attribute("units", "km"));
            yaxis.addAttribute( new Attribute(_Coordinate.AxisType, "GeoY"));
            data1 = new double[numY];
            for (int i = 0; i < numY; i++)
              data1[i] = numY0 + i*ddx;
            dataA = Array.factory(DataType.DOUBLE.getPrimitiveClassType(), new int[] {numY}, data1);
            yaxis.setCachedData( dataA, false);
            ncfile.addVariable(null, yaxis);

            ProjectionImpl projection = new FlatEarth(lat_min, lon_max);
            //ProjectionImpl projection = new LambertConformal(latitude, longitude, latitude, latitude);
            // coordinate transform variable
            Variable ct = new Variable( ncfile, null, null, projection.getClassName());
            ct.setDataType( DataType.CHAR);
            ct.setDimensions( "");
            List params = projection.getProjectionParameters();
            for (int i = 0; i < params.size(); i++) {
              Parameter p = (Parameter) params.get(i);
              ct.addAttribute( new Attribute(p));
            }
            ct.addAttribute( new Attribute(_Coordinate.TransformType, "Projection"));
            ct.addAttribute( new Attribute(_Coordinate.Axes, "x y"));
            // fake data
            dataA = Array.factory(DataType.CHAR.getPrimitiveClassType(), new int[] {});
            dataA.setChar(dataA.getIndex(), ' ');
            ct.setCachedData(dataA, false);

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        dims.add( iDim);
        ncfile.addDimension( null, iDim);
        ncfile.addDimension( null, jDim);
        //ncfile.addAttribute(null, new Attribute("cdm_data_type", thredds.catalog.DataType.GRID.toString()));
        if(cname.startsWith("Precip")) {
            ncfile.addAttribute(null, new Attribute("isRadial", new Integer(3)));
            ddx = ddx * rasp_xscale;
        }
        ncfile.addAttribute(null, new Attribute("cdm_data_type", FeatureType.GRID.toString()));
        //Variable dist = new Variable(ncfile, null, null, "distance");
        //dist.setDataType(DataType.INT);
        //dist.setDimensions(dims);
        //ncfile.addVariable(null, dist);
        //dist.setSPobject( new Vinfo ( numX, numX0, numY, numY0, hoff, hedsiz, isR, isZ, null, null, pkcode, 0));


        String coordinates = "x y time latitude longitude altitude";

        Variable v = new Variable(ncfile, null, null, cname+ "_RAW");
        v.setDataType(DataType.BYTE);
        v.setDimensions(dims);
        ncfile.addVariable(null, v);
        v.addAttribute( new Attribute("long_name", ctitle));
        v.addAttribute( new Attribute("units", cunit));
        v.setSPobject( new Vinfo (numX, numX0, numY, numY0, hoff, hedsiz, isR, isZ, null, null, pkcode, 0));
        v.addAttribute( new Attribute(_Coordinate.Axes, coordinates));

        if( cname.startsWith("VertLiquid")){
          addVariable(cname, ctitle, ncfile, dims, coordinates, DataType.FLOAT,
                       cunit, hoff, hedsiz, isZ, nlevel, levels, iscale);
        }
        else if( cname.startsWith("EchoTop")){
          addVariable(cname, ctitle, ncfile, dims, coordinates, DataType.FLOAT,
                       cunit, hoff, hedsiz, isZ, nlevel, levels, iscale);
        }
        else if( cname.startsWith("BaseReflectivityComp") || cname.startsWith("LayerCompReflect")){
          addVariable(cname, ctitle, ncfile, dims, coordinates, DataType.FLOAT,
                       cunit, hoff, hedsiz, isZ, nlevel, levels, iscale);
        }
        else if( cname.startsWith("Precip")){
          addVariable(cname, ctitle, ncfile, dims, coordinates, DataType.FLOAT,
                       cunit, hoff, hedsiz, isZ, nlevel, levels, iscale);
        }

        // create coordinate variables
        Variable xaxis = new Variable( ncfile, null, null, "x");
        xaxis.setDataType( DataType.DOUBLE);
        xaxis.setDimensions("x");
        xaxis.addAttribute( new Attribute("long_name", "projection x coordinate"));
        xaxis.addAttribute( new Attribute("units", "km"));
        xaxis.addAttribute( new Attribute(_Coordinate.AxisType, "GeoX"));
        double[] data1 = new double[numX];
        for (int i = 0; i < numX; i++)
          data1[i] = (double) (numX0 + i*ddx);
        Array dataA = Array.factory(DataType.DOUBLE.getPrimitiveClassType(), new int[] {numX}, data1);
        xaxis.setCachedData( dataA, false);
        ncfile.addVariable(null, xaxis);

        Variable yaxis = new Variable( ncfile, null, null, "y");
        yaxis.setDataType( DataType.DOUBLE);
        yaxis.setDimensions( "y");
        yaxis.addAttribute( new Attribute("long_name", "projection y coordinate"));
        yaxis.addAttribute( new Attribute("units", "km"));
        yaxis.addAttribute( new Attribute(_Coordinate.AxisType, "GeoY"));
        data1 = new double[numY];
        for (int i = 0; i < numY; i++)
          data1[i] = numY0 + i*ddx;
        dataA = Array.factory(DataType.DOUBLE.getPrimitiveClassType(), new int[] {numY}, data1);
        yaxis.setCachedData( dataA, false);
        ncfile.addVariable(null, yaxis);

        ProjectionImpl projection = new FlatEarth(lat_min, lon_max);
        //ProjectionImpl projection = new LambertConformal(latitude, longitude, latitude, latitude);
        // coordinate transform variable
        Variable ct = new Variable( ncfile, null, null, projection.getClassName());
        ct.setDataType( DataType.CHAR);
        ct.setDimensions( "");
        List params = projection.getProjectionParameters();
        for (int i = 0; i < params.size(); i++) {
          Parameter p = (Parameter) params.get(i);
          ct.addAttribute( new Attribute(p));
        }
        ct.addAttribute( new Attribute(_Coordinate.TransformType, "Projection"));
        ct.addAttribute( new Attribute(_Coordinate.Axes, "x y"));
        // fake data
        dataA = Array.factory(DataType.CHAR.getPrimitiveClassType(), new int[] {});
        dataA.setChar(dataA.getIndex(), ' ');
        ct.setCachedData(dataA, false);

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        int nlevel = code_levelslookup( pcode );
        int [] levels;

        //prod_info_size = 2 * (int) (num_bin * scale + 0.5);
        //dimensions: radial, bin
        ncfile.addAttribute(null, new Attribute("cdm_data_type", FeatureType.RADIAL.toString()));
        Dimension radialDim = new Dimension("azimuth", num_radials);
        ncfile.addDimension( null, radialDim);

        Dimension binDim = new Dimension("gate", num_bin);
        ncfile.addDimension( null, binDim);
        dims.add( radialDim);
        dims.add( binDim);

        ArrayList dims1 =  new ArrayList();
        ArrayList dims2 =  new ArrayList();
        dims1.add(radialDim);
        dims2.add(binDim);
        // Variable aziVar = new Variable(ncfile, null, null, "azimuth");
        // aziVar.setDataType(DataType.FLOAT);
        // aziVar.setDimensions(dims1);
        // ncfile.addVariable(null, aziVar);
        // aziVar.addAttribute( new Attribute("long_name", "azimuth angle in degrees: 0 = true north, 90 = east"));
        // aziVar.addAttribute( new Attribute("units", "degrees"));
        // aziVar.setSPobject( new Vinfo (numX, numX0, numY, numY0, hoff, hedsiz, isR, isZ, null, null, 0));

        // dims1 =  new ArrayList();
        // dims1.add(binDim);
        //Variable gateV = new Variable(ncfile, null, null, "gate1");
        //gateV.setDataType(DataType.FLOAT);
        //gateV.setDimensions(dims2);
        //ncfile.addVariable(null, gateV);
        //gateV.addAttribute( new Attribute("long_name", "radial distance to start of gate"));
        //gateV.addAttribute( new Attribute("units", "m"));
        //gateV.setSPobject( new Vinfo (numX, numX0, numY, radp_scale, hoff, hedsiz, isR, isZ, null, null, 0, 0));
        isR = true;

        // add elevation coordinate variable
        String vName = "elevation";
        String lName = "elevation angle in degres: 0 = parallel to pedestal base, 90 = perpendicular";
        Attribute att = new Attribute(_Coordinate.AxisType, AxisType.RadialElevation.toString());
        addParameter(vName, lName, ncfile, dims1, att, DataType.FLOAT, "degrees",hoff, hedsiz, isZ, p3);

        // add azimuth coordinate variable
        vName = "azimuth";
        lName = "azimuth angle in degrees: 0 = true north, 90 = east";
        att = new Attribute(_Coordinate.AxisType, AxisType.RadialAzimuth.toString());
        addParameter(vName, lName, ncfile, dims1, att, DataType.FLOAT, "degrees",hoff, hedsiz, isZ, 0);


        // add gate coordinate variable
        vName = "gate";
        lName = "Radial distance to the start of gate";
        att = new Attribute(_Coordinate.AxisType, AxisType.RadialDistance.toString());
        addParameter(vName, lName, ncfile, dims2, att, DataType.FLOAT, "meters",hoff, hedsiz, isZ, radp_scale);

        // add radial coordinate variable

        vName = "latitude";
        lName = "Latitude of the instrument";
        att = new Attribute(_Coordinate.AxisType, AxisType.Lat.toString());
        addParameter(vName, lName, ncfile, dims1, att, DataType.FLOAT, "degrees",hoff, hedsiz, isZ, 0);

        vName = "longitude";
        lName = "Longitude of the instrument";
        att = new Attribute(_Coordinate.AxisType, AxisType.Lon.toString());
        addParameter(vName, lName, ncfile, dims1, att, DataType.FLOAT, "degrees",hoff, hedsiz, isZ, 0);

        vName = "altitude";
        lName = "Altitude in meters (asl) of the instrument";
        att = new Attribute(_Coordinate.AxisType, AxisType.Height.toString());
        addParameter(vName, lName, ncfile, dims1, att, DataType.FLOAT, "meters",hoff, hedsiz, isZ, 0);

        vName = "rays_time";
        lName = "rays time";
        att = new Attribute(_Coordinate.AxisType, AxisType.Time.toString());
        addParameter(vName, lName, ncfile, dims1, att, DataType.DOUBLE, "milliseconds since 1970-01-01 00:00 UTC"
                    ,hoff, hedsiz, isZ, 0);
        //add RAW, BRIT variables for all radial variable
        if(pcode == 182 || pcode == 99 ) {
            levels = getTDWRLevels(nlevel, threshold);
            iscale = 10;
        } else if (pcode == 186 || pcode == 94) {
            threshold[0] = -320;
            threshold[1] = 5;
            threshold[2] = 254;
            levels = getTDWRLevels(nlevel, threshold);
            iscale = 10;
        } else if (pcode == 32  ) {
            levels = getTDWRLevels1(nlevel, threshold);
            iscale = 10;
        } else if (pcode == 138) {
            levels = getTDWRLevels1(nlevel, threshold);
            iscale = 100;
        } else if (pcode == 134 ||  pcode == 135) {
            levels = getTDWRLevels2(nlevel, threshold);
            iscale = 1;
        else {
            levels = getLevels(nlevel, threshold);
        }



        Variable v = new Variable(ncfile, null, null, cname + "_RAW");
        v.setDataType(DataType.BYTE);
        v.setDimensions(dims);
        ncfile.addVariable(null, v);
        v.addAttribute( new Attribute("units", cunit));
        String coordinates = "elevation azimuth gate rays_time latitude longitude altitude";
        v.addAttribute( new Attribute(_Coordinate.Axes, coordinates));
        v.addAttribute( new Attribute("_unsigned", "true"));
        v.setSPobject( new Vinfo (numX, numX0, numY, numY0, hoff, hedsiz, isR, isZ, null, levels, 0, nlevel));


        // addVariable(cname + "_Brightness", ctitle + " Brightness", ncfile, dims, coordinates, DataType.FLOAT,
        //                 cunit, hoff, hedsiz, isZ, nlevel, levels, iscale);
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    {
        Variable v = new Variable(nc, null, null, pName);
        v.setDataType(dtype);
        v.setDimensions(dims);
        ncfile.addVariable(null, v);
        v.addAttribute( new Attribute("long_name", longName));
        v.addAttribute( new Attribute("units", ut));
        v.addAttribute( new Attribute(_Coordinate.Axes, coordinates));
        v.setSPobject( new Vinfo (numX, numX0, numY, numY0, hoff, hedsiz, isR, isZ, null, levels, iscale, nlevel));

    }
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          Variable vVar = new Variable(nc, null, null, vName);
          vVar.setDataType(dtype);
          if( dims != null ) vVar.setDimensions(dims);
          else vVar.setDimensions("");
          if(att != null ) vVar.addAttribute(att);
          vVar.addAttribute( new Attribute("units", ut));
          vVar.addAttribute( new Attribute("long_name", longName));
          nc.addVariable(null, vVar);
          vVar.setSPobject( new Vinfo (numX, numX0, numY, y0, hoff, doff, isR, isZ, null, null, 0, 0));
    }
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            ctitle = "error" ;
            cunit = "error" ;
            cname = "error";
        }
        /* add geo global att  */
        ncfile.addAttribute(null, new Attribute("summary", "Nexrad level 3 data are WSR-88D radar products." +
                  summary ));
        ncfile.addAttribute(null, new Attribute("keywords_vocabulary", ctilt));
        ncfile.addAttribute(null, new Attribute("conventions", _Coordinate.Convention));
        ncfile.addAttribute(null, new Attribute("format", "Level3/NIDS"));
        ncfile.addAttribute(null, new Attribute("geospatial_lat_min", new Float(lat_min)));
        ncfile.addAttribute(null, new Attribute("geospatial_lat_max", new Float(lat_max)));
        ncfile.addAttribute(null, new Attribute("geospatial_lon_min", new Float(lon_min)));
        ncfile.addAttribute(null, new Attribute("geospatial_lon_max", new Float(lon_max)));
        ncfile.addAttribute(null, new Attribute("geospatial_vertical_min", new Float(height)));
        ncfile.addAttribute(null, new Attribute("geospatial_vertical_max", new Float(height)));

        ncfile.addAttribute(null, new Attribute("RadarElevationNumber", new Integer(prod_elevation)));
        dstring = formatter.toDateTimeStringISO(startDate);
        ncfile.addAttribute(null, new Attribute("time_coverage_start", dstring));
        dstring = formatter.toDateTimeStringISO(endDate);
        ncfile.addAttribute(null, new Attribute("time_coverage_end", dstring));
        ncfile.addAttribute(null, new Attribute("data_min", new Float(prod_min)));
        ncfile.addAttribute(null, new Attribute("data_max", new Float(prod_max)));
        ncfile.addAttribute(null, new Attribute("isRadial", new Integer(radial)));
    }
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