Examples of FixBondOrdersTool

Examples of org.openscience.cdk.smiles.FixBondOrdersTool

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                        SmilesParser sp = new SmilesParser(
                                DefaultChemObjectBuilder.getInstance());
                        toPaste = sp.parseSmiles(
                                ((String) transfer.getTransferData(
                                        DataFlavor.stringFlavor)).trim());
                        toPaste = new FixBondOrdersTool().kekuliseAromaticRings(toPaste);

                        IAtomContainerSet mols = ConnectivityChecker.partitionIntoMolecules(toPaste);
                        for(int i=0;i<mols.getAtomContainerCount();i++)
                        {
                            StructureDiagramGenerator sdg =
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