Examples of eu.isas.peptideshaker.scoring.MatchValidationLevel

                int column = 1;
                HSSFRow rowHead = sheet.createRow(++currentRow);
                rowHead.setHeightInPoints(12.75f);


                Cell cell = rowHead.createCell(column++);
                MatchValidationLevel matchValidationLevel = psParameter.getMatchValidationLevel();
                // High, Medium or Low - refers to the confidence in the peptide
                if (matchValidationLevel == MatchValidationLevel.confident) {
                    cell.setCellValue("High");
                } else if (matchValidationLevel == MatchValidationLevel.doubtful) {
                    cell.setCellValue("Medium");

            identification.loadSpectrumMatchParameters(peptideMatch.getSpectrumMatches(), psParameter, null);


            boolean validated = false;
            for (String spectrumKey : peptideMatch.getSpectrumMatches()) {
                psParameter = (PSParameter) identification.getSpectrumMatchParameter(spectrumKey, psParameter);
                MatchValidationLevel matchValidationLevel = psParameter.getMatchValidationLevel();
                if (matchValidationLevel.isValidated() && !validated) {
                    bestKeys.clear();
                    validated = true;
                }
                bestKeys.add(spectrumKey);
            }

Related Classes of eu.isas.peptideshaker.scoring.MatchValidationLevel

All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.