Examples of EquivalentParameter


Examples of org.openbel.framework.core.equivalence.EquivalentParameter

        final Namespace hgnc =
                new Namespace(
                        "HGNC",
                        "http://resource.belframework.org/belframework/1.0/namespace/hgnc-approved-symbols.belns");

        EquivalentParameter param1 = new EquivalentParameter(hgnc, "AKT1",
                SkinnyUUID.fromString("a32fd1cb-7d97-44ee-a0d0-db16c2a93b3f"));
        EquivalentTerm term1 = new EquivalentTerm(PROTEIN_ABUNDANCE,
                Arrays.asList((BELObject) param1));

        assertThat(term1.equals(term1), is(true));
View Full Code Here

Examples of org.openbel.framework.core.equivalence.EquivalentParameter

        final Namespace hgnc =
                new Namespace(
                        "HGNC",
                        "http://resource.belframework.org/belframework/1.0/namespace/hgnc-approved-symbols.belns");

        EquivalentParameter param1 = new EquivalentParameter(hgnc, "AKT1",
                SkinnyUUID.fromString("a32fd1cb-7d97-44ee-a0d0-db16c2a93b3f"));
        EquivalentTerm term1 = new EquivalentTerm(PROTEIN_ABUNDANCE,
                Arrays.asList((BELObject) param1));

        assertThat(term1.equals(new Object()), is(false));
View Full Code Here

Examples of org.openbel.framework.core.equivalence.EquivalentParameter

    public void testExactMatchEquivalent() {
        final Namespace hgnc =
                new Namespace(
                        "HGNC",
                        "http://resource.belframework.org/belframework/1.0/namespace/hgnc-approved-symbols.belns");
        EquivalentParameter param1 = new EquivalentParameter(hgnc, "AKT1",
                SkinnyUUID.fromString("a32fd1cb-7d97-44ee-a0d0-db16c2a93b3f"));
        EquivalentTerm term1 = new EquivalentTerm(PROTEIN_ABUNDANCE,
                Arrays.asList((BELObject) param1));
        EquivalentParameter param2 = new EquivalentParameter(hgnc, "AKT1",
                SkinnyUUID.fromString("a32fd1cb-7d97-44ee-a0d0-db16c2a93b3f"));
        EquivalentTerm term2 = new EquivalentTerm(PROTEIN_ABUNDANCE,
                Arrays.asList((BELObject) param2));

        assertThat(term1.equals(term2), is(true));
View Full Code Here

Examples of org.openbel.framework.core.equivalence.EquivalentParameter

    public void testMismatchedFunctionUnequivalent() {
        final Namespace hgnc =
                new Namespace(
                        "HGNC",
                        "http://resource.belframework.org/belframework/1.0/namespace/hgnc-approved-symbols.belns");
        EquivalentParameter param1 = new EquivalentParameter(hgnc, "AKT1",
                SkinnyUUID.fromString("a32fd1cb-7d97-44ee-a0d0-db16c2a93b3f"));
        EquivalentTerm term1 = new EquivalentTerm(PROTEIN_ABUNDANCE,
                Arrays.asList((BELObject) param1));
        EquivalentParameter param2 = new EquivalentParameter(hgnc, "AKT1",
                SkinnyUUID.fromString("a32fd1cb-7d97-44ee-a0d0-db16c2a93b3f"));
        EquivalentTerm term2 = new EquivalentTerm(GENE_ABUNDANCE,
                Arrays.asList((BELObject) param2));

        assertThat(term1.equals(term2), is(false));
View Full Code Here

Examples of org.openbel.framework.core.equivalence.EquivalentParameter

                new Namespace(
                        "EGID",
                        "http://resource.belframework.org/belframework/1.0/namespace/entrez-gene-ids-hmr.belns");

        for (final FunctionEnum f : values()) {
            EquivalentParameter param1 =
                    new EquivalentParameter(
                            hgnc,
                            "AKT1",
                            SkinnyUUID
                                    .fromString("a32fd1cb-7d97-44ee-a0d0-db16c2a93b3f"));
            EquivalentParameter param2 =
                    new EquivalentParameter(
                            hgnc,
                            "AKT2",
                            SkinnyUUID
                                    .fromString("9be88c14-6311-4452-a911-9f02abcf6a1e"));
            EquivalentTerm term1 = new EquivalentTerm(f, Arrays.asList(
                    (BELObject) param1, (BELObject) param2));

            EquivalentParameter param4 =
                    new EquivalentParameter(
                            egid,
                            "207",
                            SkinnyUUID
                                    .fromString("a32fd1cb-7d97-44ee-a0d0-db16c2a93b3f"));
            EquivalentTerm term2 = new EquivalentTerm(f,
View Full Code Here

Examples of org.openbel.framework.core.equivalence.EquivalentParameter

                new Namespace(
                        "HGNC",
                        "http://resource.belframework.org/belframework/1.0/namespace/hgnc-approved-symbols.belns");

        // different parameter uuids, not equivalent
        EquivalentParameter param1 = new EquivalentParameter(hgnc, "AKT1",
                SkinnyUUID.fromString("a32fd1cb-7d97-44ee-a0d0-db16c2a93b3f"));
        EquivalentTerm term1 = new EquivalentTerm(PROTEIN_ABUNDANCE,
                Arrays.asList((BELObject) param1));
        EquivalentParameter param2 = new EquivalentParameter(hgnc, "AKT1",
                SkinnyUUID.fromString("27e0ab06-6644-42fc-b1f7-0b98bf4e6858"));
        EquivalentTerm term2 = new EquivalentTerm(PROTEIN_ABUNDANCE,
                Arrays.asList((BELObject) param2));

        assertThat(term1.equals(term2), is(false));
View Full Code Here

Examples of org.openbel.framework.core.equivalence.EquivalentParameter

        final Namespace hgnc =
                new Namespace(
                        "HGNC",
                        "http://resource.belframework.org/belframework/1.0/namespace/hgnc-approved-symbols.belns");

        EquivalentParameter param1 = new EquivalentParameter(hgnc, "AKT1",
                SkinnyUUID.fromString("a32fd1cb-7d97-44ee-a0d0-db16c2a93b3f"));
        EquivalentTerm term1 = new EquivalentTerm(PROTEIN_ABUNDANCE,
                Arrays.asList((BELObject) param1));
        EquivalentParameter param2 = new EquivalentParameter(hgnc, "AKT2",
                SkinnyUUID.fromString("9be88c14-6311-4452-a911-9f02abcf6a1e"));
        EquivalentTerm term2 = new EquivalentTerm(PROTEIN_ABUNDANCE,
                Arrays.asList((BELObject) param2));

        assertThat(term1.equals(term2), is(false));
View Full Code Here

Examples of org.openbel.framework.core.equivalence.EquivalentParameter

        final Namespace egid =
                new Namespace(
                        "EGID",
                        "http://resource.belframework.org/belframework/1.0/namespace/entrez-gene-ids-hmr.belns");

        EquivalentParameter param1 = new EquivalentParameter(hgnc, "AKT1",
                SkinnyUUID.fromString("a32fd1cb-7d97-44ee-a0d0-db16c2a93b3f"));
        EquivalentTerm term1 = new EquivalentTerm(PROTEIN_ABUNDANCE,
                Arrays.asList((BELObject) param1));
        EquivalentParameter param2 = new EquivalentParameter(egid, "207",
                SkinnyUUID.fromString("a32fd1cb-7d97-44ee-a0d0-db16c2a93b3f"));
        EquivalentTerm term2 = new EquivalentTerm(PROTEIN_ABUNDANCE,
                Arrays.asList((BELObject) param2));

        assertThat(term1.equals(term2), is(true));
View Full Code Here

Examples of org.openbel.framework.core.equivalence.EquivalentParameter

        final Namespace egid =
                new Namespace(
                        "EGID",
                        "http://resource.belframework.org/belframework/1.0/namespace/entrez-gene-ids-hmr.belns");

        EquivalentParameter param1 = new EquivalentParameter(hgnc, "AKT1",
                SkinnyUUID.fromString("a32fd1cb-7d97-44ee-a0d0-db16c2a93b3f"));
        EquivalentTerm term1 = new EquivalentTerm(PROTEIN_ABUNDANCE,
                Arrays.asList((BELObject) param1));
        EquivalentParameter param2 = new EquivalentParameter(egid, "257",
                SkinnyUUID.fromString("aae305e5-bb6d-4e75-ac0b-85a76e1e8e09"));
        EquivalentTerm term2 = new EquivalentTerm(PROTEIN_ABUNDANCE,
                Arrays.asList((BELObject) param2));

        assertThat(term1.equals(term2), is(false));
View Full Code Here

Examples of org.openbel.framework.core.equivalence.EquivalentParameter

                        "EGID",
                        "http://resource.belframework.org/belframework/1.0/namespace/entrez-gene-ids-hmr.belns");

        for (final FunctionEnum f : values()) {
            if (f.isSequential()) {
                EquivalentParameter param1 =
                        new EquivalentParameter(
                                hgnc,
                                "AKT1",
                                SkinnyUUID
                                        .fromString("a32fd1cb-7d97-44ee-a0d0-db16c2a93b3f"));
                EquivalentParameter param2 =
                        new EquivalentParameter(
                                hgnc,
                                "AKT2",
                                SkinnyUUID
                                        .fromString("9be88c14-6311-4452-a911-9f02abcf6a1e"));
                EquivalentTerm term1 = new EquivalentTerm(f, Arrays.asList(
                        (BELObject) param1, (BELObject) param2));

                EquivalentParameter param3 =
                        new EquivalentParameter(
                                egid,
                                "207",
                                SkinnyUUID
                                        .fromString("a32fd1cb-7d97-44ee-a0d0-db16c2a93b3f"));
                EquivalentParameter param4 =
                        new EquivalentParameter(
                                egid,
                                "208",
                                SkinnyUUID
                                        .fromString("9be88c14-6311-4452-a911-9f02abcf6a1e"));
                EquivalentTerm term2 = new EquivalentTerm(f, Arrays.asList(
View Full Code Here
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