Package edu.pitt.ontology.bioportal

Examples of edu.pitt.ontology.bioportal.BioPortalRepository

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    if(text == inputLocation && inputFormats.getSelectedIndex() == 2){
      final JTextField textField = text;
      (new Thread(new Runnable(){
        public void run(){
          if(bioportalDialog == null){
            importer = new OntologyImporter(new BioPortalRepository());
            bioportalDialog = importer.showImportWizard(frame);
          }else{
            bioportalDialog.setVisible(true);
          }
          while(bioportalDialog.isShowing()){
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      ConceptImporter.getInstance().loadOBO(terminology,new File(obo));
      ConceptImporter.getInstance().removePropertyChangeListener(this);
      terminology.save();
    }else if(bioportal != null){
      log("Loading BioPortal terminology from "+bioportal+"...");
      BioPortalRepository r = new BioPortalRepository();
      IOntology ont = r.getOntology(URI.create(bioportal));
      if(ont != null){
        ont.addPropertyChangeListener(this);
        terminology.loadOntology(ont,name);
      }
      name = (name == null)?ont.getName():name;
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    String dir   = System.getProperty("user.home")+File.separator+".protegeRepository";
    IRepository r = new ProtegeRepository(driver,url,user,pass,table,dir);
    */
   
    //new BioPortalRepository()
    OntologyImporter importer = new OntologyImporter(new BioPortalRepository());
    importer.setDeepCopy(true);
    importer.setPreLoad(true);
    importer.setFreshCopy(true);
    importer.addPropertyChangeListener(new PropertyChangeListener(){
      int i = 0;
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  private void doPortal(){
   
    (new Thread(new Runnable(){
      public void run(){
        try{
          OntologyImporter importer = new OntologyImporter(new BioPortalRepository());
          importer.addPropertyChangeListener(RepositoryManager.this);
          JDialog d = importer.showImportWizard(frame);
         
         
          // wait for selection
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Related Classes of edu.pitt.ontology.bioportal.BioPortalRepository

  • edu.pitt.ontology.IOntology
  • edu.pitt.ontology.IOntologyError
  • edu.pitt.ontology.ui.OntologyImporter
  • edu.pitt.ontology.ui.RepositoryManager
  • edu.pitt.terminology.lexicon.Concept
  • edu.pitt.terminology.ui.IndexFinderLoader
  • org.w3c.dom.Document
  • java.net.URL
  • org.w3c.dom.NodeList
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