Package edu.pitt.dbmi.nlp.noble.ontology

Examples of edu.pitt.dbmi.nlp.noble.ontology.ILogicExpression

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  /**
   * get necessary restrictions
   */
  public ILogicExpression getNecessaryRestrictions() {
    ILogicExpression exp = new LogicExpression(ILogicExpression.AND);
    for(Object o: getDirectNecessaryRestrictions())
      exp.add(o);
    for(IClass parent: getSuperClasses()){
      for(Object o: parent.getDirectNecessaryRestrictions())
        exp.add(o);
    }
    return exp;
  }
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   * @param dpatterns
   * @return
   */
  public static ILogicExpression getMatchingPatterns(IClass dx, IInstance inst){
    // check for multi-pattern
    ILogicExpression result = new LogicExpression(ILogicExpression.OR);
    ILogicExpression exp = dx.getEquivalentRestrictions();
    if(exp.getExpressionType() == ILogicExpression.OR){
      for(int i=0;i<exp.size();i++){
        if(exp.get(i) instanceof ILogicExpression){
          ILogicExpression e = (ILogicExpression) exp.get(i);
          // if this pattern matches
          if(e.evaluate(inst)){
            result.add(exp.get(i));
          }
        }
      }
    }
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      IRestriction t = ont.createRestriction(r.getRestrictionType());
      t.setProperty((IProperty)convertResource(ont,r.getProperty()));
      t.setParameter((ILogicExpression)convertResource(ont,r.getParameter()));
      return t;
    }else if(value instanceof ILogicExpression){
      ILogicExpression e = (ILogicExpression) value;
      ILogicExpression t = ont.createLogicExpression();
      t.setExpressionType(e.getExpressionType());
      for(Object o: e){
        t.add(convertResource(ont,o));
      }
      return t;
    }else if(value instanceof IProperty){
      return ont.getProperty(((IProperty) value).getName());
    }else if(value instanceof IClass){
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      for(IClass c: source.getDisjointClasses()){
        cls.addDisjointClass((IClass)convertResource(ont,c));
      }
     
      // copy necessary restrictions
      ILogicExpression exp = source.getNecessaryRestrictions();
      if(exp.getExpressionType() == ILogicExpression.OR){
        cls.addSuperClass(ont.createClass((ILogicExpression) convertResource(ont,exp)));
      }else{
        for(Object c: exp){
          if(c instanceof IRestriction)
            cls.addNecessaryRestriction((IRestriction)convertResource(ont,c));
          else if(c instanceof IClass)
            cls.addSuperClass((IClass) convertResource(ont,c));
          else if(c instanceof ILogicExpression)
            cls.addSuperClass(ont.createClass((ILogicExpression) convertResource(ont,exp)));   
        }
      }
     
      // copy equivalent restrictions
      exp = source.getEquivalentRestrictions();
      if(exp.getExpressionType() == ILogicExpression.OR){
        cls.addEquivalentClass(ont.createClass((ILogicExpression) convertResource(ont,exp)));
      }else{
        for(Object c: exp){
          if(c instanceof IRestriction)
            cls.addEquivalentRestriction((IRestriction)convertResource(ont,c));
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        buffer.append("<tr valign=top><td><b>Equivalent Classes: </b></td><td>"+
            toHTML(cls.getEquivalentClasses())+"</td></tr>");
      if(cls.getDisjointClasses() != null && cls.getDisjointClasses().length > 0)
        buffer.append("<tr valign=top><td><b>Disjoint Classes: </b></td><td>"+
            toHTML(cls.getDisjointClasses())+"</td></tr>");
      ILogicExpression exp = cls.getEquivalentRestrictions();
      if(exp != null && !exp.isEmpty() )
        buffer.append("<tr valign=top><td><b>Equivalent Restrictions: </b></td><td>"+
            toHTML(exp)+"</td></tr>");
      exp = cls.getDirectNecessaryRestrictions();
      if(exp != null && !exp.isEmpty() )
        buffer.append("<tr valign=top><td><b>Necessary Restrictions: </b></td><td>"+
            toHTML(exp)+"</td></tr>");
      // do paths to root
      List<ClassPath> paths = getRootPaths(cls);
      if(!paths.isEmpty() ){
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Related Classes of edu.pitt.dbmi.nlp.noble.ontology.ILogicExpression

  • edu.pitt.dbmi.nlp.noble.extract.model.util.SlideTutorOntologyHelper
  • edu.pitt.dbmi.nlp.noble.ontology.owl.OClass
  • edu.pitt.dbmi.nlp.noble.ontology.owl.OResource
  • edu.pitt.dbmi.nlp.noble.ontology.owl.ORestriction
  • edu.pitt.dbmi.nlp.noble.ontology.protege.PClass
  • edu.pitt.dbmi.nlp.noble.ontology.protege.PResource
  • edu.pitt.dbmi.nlp.noble.ontology.protege.PRestriction
  • edu.pitt.dbmi.nlp.noble.ui.OntologyExplorer
  • edu.pitt.dbmi.nlp.noble.ui.OntologyImporter
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