Examples of DataSource


Examples of org.apache.tomcat.jdbc.pool.DataSource

public class TomcatJdbcPoolDatasourceAccessor implements DatasourceAccessor {

    public DataSourceInfo getInfo(Object resource) throws Exception {
        DataSourceInfo dataSourceInfo = null;
        if (canMap(resource)) {
            DataSource source = (DataSource) resource;
            dataSourceInfo = new DataSourceInfo();
            dataSourceInfo.setBusyConnections(source.getNumActive());
            dataSourceInfo.setEstablishedConnections(source.getNumIdle() + source.getNumActive());
            dataSourceInfo.setMaxConnections(source.getMaxActive());
            dataSourceInfo.setJdbcURL(source.getUrl());
            dataSourceInfo.setUsername(source.getUsername());
            dataSourceInfo.setResettable(false);
        }
        return dataSourceInfo;
    }
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Examples of org.applause.lang.applauseDsl.DataSource

    return _head;
  }
 
  public DataSourceAccessMethod deleteMethod(final Screen it) {
    DataSourceCall _datasource = it.getDatasource();
    DataSource _datasource_1 = _datasource.getDatasource();
    EList<DataSourceAccessMethod> _methods = _datasource_1.getMethods();
    final Function1<DataSourceAccessMethod,Boolean> _function = new Function1<DataSourceAccessMethod,Boolean>() {
      public Boolean apply(final DataSourceAccessMethod it) {
        RESTSpecification _restSpecification = it.getRestSpecification();
        RESTVerb _verb = _restSpecification.getVerb();
        boolean _equals = Objects.equal(_verb, RESTVerb.DELETE);
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Examples of org.broad.igv.data.DataSource

            if (PeakTrack.animate) {
                int step = track.getTimeStep();
                DataSource[] timeSignalSources = track.getTimeSignalSources();
                int idx = Math.min(step, timeSignalSources.length - 1);
                DataSource src = timeSignalSources[idx];
                if (src != null) {
                    int top = rect.y + 2;List<LocusScore> timeSignals = src.getSummaryScoresForRange(chr, contextStart, contextEnd, zoom);
                    Rectangle timeSignalRect = new Rectangle(rect.x, top, rect.width, signalHeight - 1);
                    chartRenderer.render(timeSignals, context, timeSignalRect, track);
                }
            } else {
                if (track.getDisplayMode() == Track.DisplayMode.EXPANDED) {

                    DataSource[] timeSignalSources = track.getTimeSignalSources();
                    if (timeSignalSources != null) {
                        int top = rect.y + 2;
                        for (int i = 0; i < timeSignalSources.length; i++) {
                            DataSource src = timeSignalSources[i];
                            if (src != null) {
                                List<LocusScore> timeSignals = src.getSummaryScoresForRange(chr, contextStart, contextEnd, zoom);
                                Rectangle timeSignalRect = new Rectangle(rect.x, top, rect.width, signalHeight - 1);
                                chartRenderer.render(timeSignals, context, timeSignalRect, track);
                            }
                            top += h;
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Examples of org.broadinstitute.gatk.engine.walkers.DataSource

     * @param walker walker to interrogate.
     * @param dataProvider Data which which to drive the locus view.
     * @return A view of the locus data, where one iteration of the locus view maps to one iteration of the traversal.
     */
    private LocusView getLocusView( Walker<M,T> walker, LocusShardDataProvider dataProvider ) {
        final DataSource dataSource = WalkerManager.getWalkerDataSource(walker);
        if( dataSource == DataSource.READS )
            return new CoveredLocusView(dataProvider);
        else if( dataSource == DataSource.REFERENCE ) //|| ! GenomeAnalysisEngine.instance.getArguments().enableRodWalkers )
            return new AllLocusView(dataProvider);
        else if( dataSource == DataSource.REFERENCE_ORDERED_DATA )
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Examples of org.castor.jdo.conf.DataSource

    /* Get a (single) connection from this engine. Yes, this needs
       serious re-work. It should be re-written to work with the JDO
       and/or Tyrex pooling mechanism. */
    Connection getConnection() throws DTXException {
        if (_conn == null) {
            DataSource datasource = _database.getDatabaseChoice().getDataSource();
            org.castor.jdo.conf.Driver driver = _database.getDatabaseChoice().getDriver();

            if (datasource != null) {
                throw new DTXException("dtx.DataSourceUnimplemented");
            } else if (driver != null) {
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Examples of org.exolab.castor.jdo.conf.DataSource

   * @param props properties to be used for the DataSource
   * @return JDO Datasource configuration
   */
  public static DataSource createJdoDSConf(String dsClassName, Properties props)
  {
    DataSource dsConf = new DataSource();

    dsConf.setClassName(dsClassName);

    for (Enumeration e=props.keys(); e.hasMoreElements(); ) {
        Object key = e.nextElement();
        Object value = props.get(key);

        dsConf.addParam(createJdoConfParam(key.toString(), value.toString()));
    }

    return dsConf;
  }
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Examples of org.gdal.ogr.DataSource

         Usage();

      /* -------------------------------------------------------------------- */
      /*      Try to open as an existing dataset for update access.           */
      /* -------------------------------------------------------------------- */
      DataSource poDstDS;
      Layer poDstLayer = null;

      poDstDS = ogr.Open( pszOutputName, true );

      /* -------------------------------------------------------------------- */
      /*      If that failed, find the driver so we can create the tile index.*/
      /* -------------------------------------------------------------------- */
      if( poDstDS == null )
      {       
         Driver poDriver = null;

         for( int iDriver = 0; iDriver < ogr.GetDriverCount() && poDriver == null; iDriver++ )
         {
            poDriver = ogr.GetDriverByName(pszFormat);
         }

         if( poDriver == null )
         {
            System.err.print("Unable to find driver '"+pszFormat+"'.\n");
            System.err.print("The following drivers are available:\n" );

            for( int iDriver = 0; iDriver < ogr.GetDriverCount(); iDriver++ )
            {
               System.err.print("  . '"+ogr.GetDriver(iDriver).GetName()+"'\n");
            }
            return;
         }

         if( !poDriver.TestCapability( ogr.ODrCCreateDataSource ) )
         {
            System.err.print(pszFormat + " driver does not support data source creation.\n");                 
            return;
         }

         /* -------------------------------------------------------------------- */
         /*      Now create it.                                                  */
         /* -------------------------------------------------------------------- */

         poDstDS = poDriver.CreateDataSource( pszOutputName );
         if( poDstDS == null )
         {
            System.err.print(pszFormat + " driver failed to create "+pszOutputName+"\n");
            return;
         }

         if ( poDstDS.GetLayerCount() == 0 )
         {
            FieldDefn oLocation = new FieldDefn( pszTileIndexField, ogr.OFTString );

            oLocation.SetWidth( 200 );

            if( nFirstSourceDataset < args.length-2 && args[nFirstSourceDataset].charAt(0) == '-' )
            {
               nFirstSourceDataset++;
            }

            SpatialReference poSrcSpatialRef = null;

            /* Fetches the SRS of the first layer and use it when creating the tileindex layer */
            if (nFirstSourceDataset < args.length)
            {
               DataSource poDS = ogr.Open( args[nFirstSourceDataset],false );

               if (poDS!=null)
               {
                  for(int iLayer = 0; iLayer < poDS.GetLayerCount(); iLayer++ )
                  {
                     boolean bRequested = bLayersWildcarded;
                     Layer poLayer = poDS.GetLayer(iLayer);

                     for(int iArg = 0; iArg < args.length && !bRequested; iArg++ )
                     {
                        if( args[iArg].equalsIgnoreCase("-lnum")
                              && Integer.parseInt(args[iArg+1]) == iLayer )
                           bRequested = true;
                        else if( args[iArg].equalsIgnoreCase("-lname")
                              && args[iArg+1].equalsIgnoreCase(poLayer.GetLayerDefn().GetName()) )
                           bRequested = true;
                     }

                     if( !bRequested )
                        continue;

                     if ( poLayer.GetSpatialRef() != null)
                        poSrcSpatialRef = poLayer.GetSpatialRef().Clone();
                     break;
                  }
               }

               poDS.delete();
            }

            poDstLayer = poDstDS.CreateLayer( "tileindex", poSrcSpatialRef );
            poDstLayer.CreateField( oLocation, ogr.OFTString );

            /* with the OGR Java bindings, avoid using the delete() methods,
             * except on the datasource objects, where it is necessary to close properly the
             * native file handles.
             */ 
            // poSrcSpatialRef.delete();
         }
      }

      /* -------------------------------------------------------------------- */
      /*      Identify target layer and field.                                */
      /* -------------------------------------------------------------------- */
      int   iTileIndexField;

      poDstLayer = poDstDS.GetLayer(0);
      if( poDstLayer == null )
      {
         System.err.print("Can't find any layer in output tileindex!\n" );
         return;
      }

      iTileIndexField =
         poDstLayer.GetLayerDefn().GetFieldIndex( pszTileIndexField );
      if( iTileIndexField == -1 )
      {
         System.err.print("Can't find "+pszTileIndexField+" field in tile index dataset.\n");
         return;
      }

      FeatureDefn poFeatureDefn = null;

      /* Load in memory existing file names in SHP */
      int nExistingLayers = 0;
      String[] existingLayersTab = null;
      SpatialReference alreadyExistingSpatialRef = null;
      boolean alreadyExistingSpatialRefValid = false;
      nExistingLayers = poDstLayer.GetFeatureCount();
      if (nExistingLayers > 0)
      {
         existingLayersTab = new String[nExistingLayers];
         for(int i=0;i<nExistingLayers;i++)
         {
            Feature feature = poDstLayer.GetNextFeature();
            existingLayersTab[i] = feature.GetFieldAsString( iTileIndexField);
            if (i == 0)
            {
               DataSource       poDS;
               String filename = existingLayersTab[i];
               int j;
               for(j=filename.length()-1;j>=0;j--)
               {
                  if (filename.charAt(j) == ',')
                     break;
               }
               if (j >= 0)
               {
                  int iLayer = Integer.parseInt(filename.substring(j + 1));
                  filename = filename.substring(0, j);
                  poDS = ogr.Open(filename,false );
                  if (poDS!=null)
                  {
                     Layer poLayer = poDS.GetLayer(iLayer);
                     if (poLayer!=null)
                     {
                        alreadyExistingSpatialRefValid = true;
                        alreadyExistingSpatialRef =
                           (poLayer.GetSpatialRef()!=null) ? poLayer.GetSpatialRef().Clone() : null;

                           if (poFeatureDefn == null) {
                              poFeatureDefn = CloneFeatureDefn(poLayer.GetLayerDefn()); // XXX: no Clone supported in java binding!!
                           }
                     }
                     poDS.delete();
                  }
               }
            }
         }
      }

      /* ignore check */
      //if (write_absolute_path)
      //{
      //   current_path = CPLGetCurrentDir();
      //   if (current_path == null)
      //   {
      //      fprintf( stderr, "This system does not support the CPLGetCurrentDir call. "
      //      "The option -write_absolute_path will have no effect\n");
      //      write_absolute_path = false;
      //   }
      //}
      /* ==================================================================== */
      /*      Process each input datasource in turn.                          */
      /* ==================================================================== */

      for(; nFirstSourceDataset < args.length; nFirstSourceDataset++ )
      {
         DataSource       poDS;

         if( args[nFirstSourceDataset].charAt(0) == '-' )
         {
            nFirstSourceDataset++;
            continue;
         }

         String fileNameToWrite;

         //VSIStatBuf sStatBuf;
         // FIXME: handle absolute path check
         //if (write_absolute_path && CPLIsFilenameRelative( args[nFirstSourceDataset] ) &&
         //      VSIStat( args[nFirstSourceDataset], &sStatBuf ) == 0)
         //{
         //   fileNameToWrite = CPLStrdup(CPLProjectRelativeFilename(current_path,args[nFirstSourceDataset]));
         //}
         //else
         //{
         //   fileNameToWrite = args[nFirstSourceDataset];
         //}
         fileNameToWrite = args[nFirstSourceDataset];

         poDS = ogr.Open( args[nFirstSourceDataset], false );

         if( poDS == null )
         {
            System.err.print("Failed to open dataset "+args[nFirstSourceDataset]+", skipping.\n");
            continue;
         }

         /* -------------------------------------------------------------------- */
         /*      Check all layers, and see if they match requests.               */
         /* -------------------------------------------------------------------- */
         for(int iLayer = 0; iLayer < poDS.GetLayerCount(); iLayer++ )
         {
            boolean bRequested = bLayersWildcarded;
            Layer poLayer = poDS.GetLayer(iLayer);

            for(int iArg = 0; iArg < args.length && !bRequested; iArg++ )
            {
               if( args[iArg].equalsIgnoreCase("-lnum")
                     && Integer.parseInt(args[iArg+1]) == iLayer )
                  bRequested = true;
               else if( args[iArg].equalsIgnoreCase("-lname")
                     && args[iArg+1].equalsIgnoreCase(poLayer.GetLayerDefn().GetName()) )
                  bRequested = true;
            }

            if( !bRequested )
               continue;

            /* Checks that the layer is not already in tileindex */
            int i;
            for(i=0;i<nExistingLayers;i++)
            {
               String szLocation = fileNameToWrite+","+iLayer;
               if (szLocation.equalsIgnoreCase(existingLayersTab[i]))
               {
                  System.err.println("Layer "+iLayer+" of "+args[nFirstSourceDataset]+" is already in tileindex. Skipping it.\n");
                  break;
               }
            }
            if (i != nExistingLayers)
            {
               continue;
            }

            SpatialReference spatialRef = poLayer.GetSpatialRef();
            if (alreadyExistingSpatialRefValid)
            {
               if ((spatialRef != null && alreadyExistingSpatialRef != null &&
                     spatialRef.IsSame(alreadyExistingSpatialRef) == 0) ||
                     ((spatialRef != null) != (alreadyExistingSpatialRef != null)))
               {
                  System.err.print("Warning : layer "+iLayer+" of "+args[nFirstSourceDataset]+" is not using the same projection system as "
                        + "other files in the tileindex. This may cause problems when "
                        + "using it in MapServer for example."+((skip_different_projection) ? " Skipping it" : "")+"\n");
                  ;
                  if (skip_different_projection)
                  {
                     continue;
                  }
               }
            }
            else
            {
               alreadyExistingSpatialRefValid = true;
               alreadyExistingSpatialRef = (spatialRef!=null) ? spatialRef.Clone() : null;
            }

            /* -------------------------------------------------------------------- */
            /*    Check if all layers in dataset have the same attributes  schema. */
            /* -------------------------------------------------------------------- */
            if( poFeatureDefn == null )
            {
               poFeatureDefn = CloneFeatureDefn(poLayer.GetLayerDefn()); // XXX: no Clone supported in java binding!!
            }
            else if ( !accept_different_schemas )
            {
               FeatureDefn poFeatureDefnCur = poLayer.GetLayerDefn();
               assert(null != poFeatureDefnCur);

               int fieldCount = poFeatureDefnCur.GetFieldCount();

               if( fieldCount != poFeatureDefn.GetFieldCount())
               {
                  System.err.print("Number of attributes of layer "+poLayer.GetLayerDefn().GetName()+" of "+args[nFirstSourceDataset]+" does not match ... skipping it.\n");

                  if (bFirstWarningForNonMatchingAttributes)
                  {
                     System.err.print("Note : you can override this behaviour with -accept_different_schemas option\n"
                           + "but this may result in a tileindex incompatible with MapServer\n");
                     bFirstWarningForNonMatchingAttributes = false;
                  }
                  continue;
               }

               boolean bSkip = false;
               for( int fn = 0; fn < poFeatureDefnCur.GetFieldCount(); fn++ )
               {
                  FieldDefn poField = poFeatureDefn.GetFieldDefn(fn);
                  FieldDefn poFieldCur = poFeatureDefnCur.GetFieldDefn(fn);

                  /* XXX - Should those pointers be checked against null? */
                  assert(null != poField);
                  assert(null != poFieldCur);

                  if( !poField.GetTypeName().equalsIgnoreCase(poFieldCur.GetTypeName())
                        || poField.GetWidth() != poFieldCur.GetWidth()
                        || poField.GetPrecision() != poFieldCur.GetPrecision()
                        || !poField.GetNameRef().equalsIgnoreCase(poFieldCur.GetNameRef()) )
                  {
                     System.err.print("Schema of attributes of layer "+poLayer.GetLayerDefn().GetName()+" of "+args[nFirstSourceDataset]+" does not match ... skipping it.\n");

                     if (bFirstWarningForNonMatchingAttributes)
                     {
                        System.err.print("Note : you can override this behaviour with -accept_different_schemas option\n"
                              + "but this may result in a tileindex incompatible with MapServer\n");
                        bFirstWarningForNonMatchingAttributes = false;
                     }
                     bSkip = true;
                     break;
                  }
               }

               if (bSkip)
                  continue;
            }


            /* -------------------------------------------------------------------- */
            /*      Get layer extents, and create a corresponding polygon           */
            /*      geometry.                                                       */
            /* -------------------------------------------------------------------- */
            double sExtents[] = poLayer.GetExtent(true);
            Geometry/*Polygon*/ oRegion = new Geometry(ogr.wkbPolygon);
            Geometry/*LinearRing*/ oRing = new Geometry(ogr.wkbLinearRing);
            
            if (sExtents == null) {
               System.err.print("GetExtent() failed on layer "+poLayer.GetLayerDefn().GetName()+" of "+args[nFirstSourceDataset]+", skipping.\n");
               continue;
            }
                                   
            // XXX: sExtents [minX, maxX, minY, maxY]
            //oRing.addPoint( sExtents.MinX, sExtents.MinY );
            //oRing.addPoint( sExtents.MinX, sExtents.MaxY );
            //oRing.addPoint( sExtents.MaxX, sExtents.MaxY );
            //oRing.addPoint( sExtents.MaxX, sExtents.MinY );
            //oRing.addPoint( sExtents.MinX, sExtents.MinY );
            oRing.AddPoint_2D( sExtents[0], sExtents[2] );
            oRing.AddPoint_2D( sExtents[0], sExtents[3] );
            oRing.AddPoint_2D( sExtents[1], sExtents[3] );
            oRing.AddPoint_2D( sExtents[1], sExtents[2] );
            oRing.AddPoint_2D( sExtents[0], sExtents[2] );

            oRegion.AddGeometry( oRing );

            /* -------------------------------------------------------------------- */
            /*      Add layer to tileindex.                                         */
            /* -------------------------------------------------------------------- */
            String        szLocation = fileNameToWrite+","+iLayer;
            Feature  oTileFeat = new Feature( poDstLayer.GetLayerDefn() );

            oTileFeat.SetGeometry( oRegion );
            oTileFeat.SetField( iTileIndexField, szLocation );

            if( poDstLayer.CreateFeature( oTileFeat ) != ogr.OGRERR_NONE )
            {
               System.err.print("Failed to create feature on tile index ... terminating." );
               poDS.delete();
               poDstDS.delete();
               return;
            }
         }

         /* -------------------------------------------------------------------- */
         /*      Cleanup this data source.                                       */
         /* -------------------------------------------------------------------- */
         poDS.delete();
      }

      /* -------------------------------------------------------------------- */
      /*      Close tile index and clear buffers.                             */
      /* -------------------------------------------------------------------- */
 
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Examples of org.gdbms.engine.data.DataSource

   * Access to the PK field
   *
   * @throws Exception DOCUMENT ME!
   */
  public void testPKAccess() throws Exception {
    DataSource d = ds.getDataSource("hsqldbpersona");
    d.start();

    String[] pks = d.getDataSourceMetadata().getPrimaryKey();
    assertTrue(pks.length == 1);
    assertTrue(pks[0].toUpperCase().equals("ID"));
    d.stop();
  }
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Examples of org.globus.ftp.DataSource

 
  public void upload(File file, String directory, String remoteFile, GSSCredential credential){
    try {
      GridFTPClient gridFTPClient = new GridFTPClient("", 9393);
      gridFTPClient.authenticate(credential);
      DataSource source = new DataSourceStream(new FileInputStream(file));
      if(null != directory){
        gridFTPClient.changeDir(directory);
      }
      gridFTPClient.extendedPut(remoteFile, source, this);
    } catch (ServerException e) {
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Examples of org.grouplens.lenskit.eval.data.DataSource

    @Override
    protected List<Object> perform() throws TaskExecutionException, InterruptedException {
        List<Object> results = Lists.newArrayList();
        for (TTDataSet data: trainTestSets) {
            // FIXME Pack the query data
            DataSource train = packDataSource(data.getTrainingData());
            DataSource test = packDataSource(data.getTestData());
            results.add(GenericTTDataSet.copyBuilder(data)
                                        .setTrain(train)
                                        .setTest(test)
                                        .build());
        }
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