Package cysbml.gui

Examples of cysbml.gui.NavigationPanel

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    }
   
  }
 
  protected void updateNavigationPanel(CyNetwork network){
    NavigationPanel panel = NavigationPanel.getInstance();
    panel.putSBMLDocument(network.getIdentifier(), document, network);
  }
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      }
  }
 
  public void displayReactionsInCurrentSBMLDocument(){
    // Get the current SBML document via Singleton instance of the navigatin panel
    NavigationPanel panel = NavigationPanel.getInstance();
    SBMLDocument doc = panel.getCurrentSBMLDocument();
   
    // Work with the current SBML document
    String text = null;
    if (doc == null){
      text = "No SBML document available for current network";
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    super("", icon);
    this.putValue(Action.SHORT_DESCRIPTION, CySBML.NAME + " Hide/Show Panel");
  }
   
    public void actionPerformed(ActionEvent ae) {
      NavigationPanel navPanel = NavigationPanel.getInstance();
      if (navPanel.isActive()){
        navPanel.deactivate();
      }else{
        navPanel.activate();
      }
    }     
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    updateNavigationPanel(network);
  }
 
  @Override
  public void updateNavigationPanel(CyNetwork network){
    NavigationPanel cySBMLPanel = NavigationPanel.getInstance();
    cySBMLPanel.putSBMLDocumentForLayout(getNetworkName(), document, network, layout);
  }
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    VisualStyleManager.setVisualStyleForNetwork(network, CustomStyle.GRN_STYLE);
  }
 
  @Override
  public void updateNavigationPanel(CyNetwork network){
    NavigationPanel panel = NavigationPanel.getInstance();
    panel.putSBMLDocumentForGRN(getNetworkName(), document, network);
  } 
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Related Classes of cysbml.gui.NavigationPanel

  • cysbml.cyactions.ChangeStateAction
  • cysbml.grn.GRNGraphReader
  • cysbml.mapping.NamedSBaseToNodeMapping
  • cysbml.mapping.NavigationTree
  • cysbml.mapping.OneToManyMapping
  • cysbml.miriam.NamedSBaseInfoThread
  • cysbml.SBMLGraphReader
  • cysbml.SBMLLayoutGraphReader
  • cysbmlexample.CySBMLExample
  • cytoscape.CyNetwork
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