Examples of CyRow

org.cytoscape.model.CyRow

Examples of org.cytoscape.model.CyRow

            }
          }
      /*if (netNodeTbl.getColumn(SCORE_ATTR) == null)
        netNodeTbl.createColumn(SCORE_ATTR, Double.class, false);*/


      CyRow nodeRow = network.getRow(n);
      nodeRow.set(NODE_STATUS_ATTR, "Unclustered");
//      nodeRow.set(SCORE_ATTR, alg.getNodeScore(n.getSUID(), resultId));
      
         if(currentParamsCopy.getAlgorithm().equals(ParameterSet.MCODE)){
            nodeRow.set(SCORE_ATTR, alg.getNodeScore(n.getSUID(), resultId));
          }
          


      for (final Cluster cluster : clusters) {
        if (cluster.getALCluster().contains(rgi)) {
          Set<String> clusterNameSet = new LinkedHashSet<String>();


          if (nodeRow.isSet(CLUSTER_ATTR))
            clusterNameSet.addAll(nodeRow.getList(CLUSTER_ATTR, String.class));


          clusterNameSet.add(cluster.getName());
          nodeRow.set(CLUSTER_ATTR, new ArrayList<String>(clusterNameSet));


          if (cluster.getSeedNode() == rgi)
            nodeRow.set(NODE_STATUS_ATTR, "Seed");
          else
            nodeRow.set(NODE_STATUS_ATTR, "Clustered");
        }
      }
    }


    if(currentParamsCopy.getAlgorithm().equals(ParameterSet.MCODE)){

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Examples of org.cytoscape.model.CyRow

          )
        {
          CyNode node = (CyNode)localIterator1.next();


          ArrayList attributeValues = new ArrayList();
          CyRow row = net.getRow(node);
          Class type = row.getTable().getColumn(attributeName).getType();


          if (Collection.class.isAssignableFrom(type)) {
            Collection valueList = (Collection)row.get(attributeName, type);


            if (valueList != null)
              for (Iterator localIterator2 = valueList.iterator(); localIterator2.hasNext(); ) { value = localIterator2.next();
                attributeValues.add(value); }
          }
          else
          {
            attributeValues.add(row.get(attributeName, type));
          }


          value = attributeValues.iterator(); 
          Object aviElement = ((Iterator) value).next();
          if (aviElement != null) {

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Examples of org.cytoscape.model.CyRow

   */
  public String getNodeNameList(CyNetwork network) {
    StringBuffer sb = new StringBuffer();


    for (CyNode node : network.getNodeList()) {
      CyRow row = network.getRow(node);
      String id = "" + node.getSUID();


      if (row.isSet(CyNetwork.NAME)) {
        id = row.get(CyNetwork.NAME, String.class);
      }


      sb.append(id);
      sb.append(", ");
    }

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