Package com.googlecode.gaal.vis.impl

Examples of com.googlecode.gaal.vis.impl.TikzReducedIntervalDrawing$TreeNode

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    }

    public static void visualizeSuffixArray(Appendable buffer, String caption, String label, SuffixArray sa,
            SymbolTable<String> symbolTable) throws IOException {

        Drawing drawing = new TikzReducedIntervalDrawing(buffer, caption, label, 0.65, 0.65, 26, 0);
        TableVisualizer<String> tableVisualizer = new TableVisualizer<String>(sa.getSequence(), symbolTable);
        tableVisualizer.visualizeTable(drawing, sa.getSuffixTable(), "suftab", 6, TikzConstants.RED_CELL);
        tableVisualizer.visualizeTable(drawing, sa.getLcpTable(), "lcptab", 6, TikzConstants.GREEN_CELL);
        drawing.flush();
    }
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    }

    public static void visualizeInverseSuffixTable(Appendable buffer, String caption, String label, SuffixArray sa,
            SymbolTable<String> symbolTable) throws IOException {

        Drawing drawing = new TikzReducedIntervalDrawing(buffer, caption, label, "H", 0.65, 0.65, 26, 0);
        TableVisualizer<String> tableVisualizer = new TableVisualizer<String>(sa.getSequence(), symbolTable);
        tableVisualizer.visualizeIndexTable(drawing, sa.getSuffixTable().length, "index", 6,
                TikzConstants.LIGHT_BLUE_CELL);
        tableVisualizer.visualizeTable(drawing, sa.getSuffixTable(), "suftab", 6, TikzConstants.RED_CELL);
        tableVisualizer.visualizeTable(drawing, sa.getInverseSuffixTable(), "saftab$^{-1}$", 6,
                TikzConstants.GREEN_CELL);
        drawing.flush();
    }
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    }

    public static <S> void visualizeInterval(Appendable buffer, String caption, String label, SuffixArray sa,
            Interval interval, int length, int windowSize, SymbolTable<S> symbolTable) throws IOException {

        Drawing drawing = new TikzReducedIntervalDrawing(buffer, caption, label, 0.65, 0.65, 26, 0);
        TableVisualizer<S> tableVisualizer = new TableVisualizer<S>(sa.getSequence(), symbolTable);
        tableVisualizer.visualizeInterval(drawing, interval, length, windowSize);
        drawing.flush();
    }
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    }

    public static void visualizeEnhancedSuffixArray(Appendable buffer, String caption, String label,
            EnhancedSuffixArray esa, SymbolTable<String> symbolTable) throws IOException {

        Drawing drawing = new TikzReducedIntervalDrawing(buffer, caption, label, 0.65, 0.65, 26, 0);
        TableVisualizer<String> tableVisualizer = new TableVisualizer<String>(esa.getSequence(), symbolTable);
        tableVisualizer.visualizeTable(drawing, esa.getSuffixTable(), "suftab", 6, TikzConstants.RED_CELL);
        tableVisualizer.visualizeTable(drawing, esa.getLcpTable(), "lcptab", 6, TikzConstants.GREEN_CELL);
        tableVisualizer.visualizeTable(drawing, esa.getChildTable(), "cldtab", 6, TikzConstants.BLUE_CELL);
        drawing.flush();
    }
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    }

    public static void visualizeLinearizedSuffixTree(Appendable buffer, String caption, String label,
            LinearizedSuffixTree lst, SymbolTable<String> symbolTable) throws IOException {

        Drawing drawing = new TikzReducedIntervalDrawing(buffer, caption, label, 0.65, 0.65, 26, 0);
        TableVisualizer<String> tableVisualizer = new TableVisualizer<String>(lst.getSequence(), symbolTable);
        tableVisualizer.visualizeTable(drawing, lst.getSuffixTable(), "suftab", 6, TikzConstants.RED_CELL);
        tableVisualizer.visualizeTable(drawing, lst.getLcpTable(), "lcptab", 6, TikzConstants.GREEN_CELL);
        tableVisualizer.visualizeTable(drawing, lst.getChildTable(), "newcldtab", 6, TikzConstants.BLUE_CELL);
        drawing.flush();
    }
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    }

    public static void visualizeEmbeddedSuffixTree(Appendable buffer, String caption, String label,
            EmbeddedSuffixTree est, SymbolTable<String> symbolTable) throws IOException {

        Drawing drawing = new TikzReducedIntervalDrawing(buffer, caption, label, "H", 0.65, 0.65, 26, 0);
        TableVisualizer<String> tableVisualizer = new TableVisualizer<String>(est.getSequence(), symbolTable);
        tableVisualizer.visualizeTable(drawing, est.getSuffixTable(), "suftab", 6, TikzConstants.RED_CELL);
        tableVisualizer.visualizeTable(drawing, est.getLcpTable(), "lcptab", 6, TikzConstants.GREEN_CELL);
        tableVisualizer.visualizeTable(drawing, est.getChildTable(), "newcldtab", 6, TikzConstants.BLUE_CELL);
        drawing.flush();
    }
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    public static <E extends Interval, T extends SuffixArray & IntervalTree<E>> void visualizeMaximalIntervals(
            Appendable buffer, String caption, String label, T tree, SymbolTable<String> symbolTable)
            throws IOException {

        Drawing drawing = new TikzReducedIntervalDrawing(buffer, caption, label, 0.65, 0.65, 26, 0);
        TreeVisualizer<String> treeVisualizer = new TreeVisualizer<String>(symbolTable, true);
        treeVisualizer.visualizeTree(drawing, tree);
        TableVisualizer<String> tableVisualizer = new TableVisualizer<String>(tree.getSequence(), symbolTable);
        tableVisualizer.visualizeTable(drawing, buildBwtTable(tree.getSuffixTable(), tree.getSequence(), symbolTable),
                "bwttab", 6, TikzConstants.ORANGE_CELL);
        tableVisualizer.visualizeSuffixIntervals(drawing, tree, treeVisualizer.getStyleMap());
        drawing.flush();
    }
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        drawing.flush();
    }

    public static <S, E extends Interval> void visualizeSuffixTree(Appendable buffer, String caption, String label,
            IntervalTree<E> tree, SymbolTable<S> symbolTable) throws IOException {
        Drawing drawing = new TikzReducedIntervalDrawing(buffer, caption, label, 0.65, 0.65, 26, 2);
        TreeVisualizer<S> treeVisualizer = new TreeVisualizer<S>(symbolTable, false);
        treeVisualizer.visualizeTree(drawing, tree);
        drawing.flush();
    }
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    public static <S, E extends Interval, T extends SuffixArray & IntervalTree<E>> void visualizeIntervalTree(
            Appendable buffer, String caption, String label, T tree, int[] childTable, SymbolTable<S> symbolTable)
            throws IOException {

        Drawing drawing = new TikzReducedIntervalDrawing(buffer, caption, label, 0.65, 0.65, 26, 0);
        TreeVisualizer<S> treeVisualizer = new TreeVisualizer<S>(symbolTable, true);
        treeVisualizer.visualizeTree(drawing, tree);
        TableVisualizer<S> tableVisualizer = new TableVisualizer<S>(tree.getSequence(), symbolTable);
        tableVisualizer.visualizeTable(drawing, tree.getSuffixTable(), "suftab", 6, TikzConstants.RED_CELL);
        tableVisualizer.visualizeTable(drawing, tree.getLcpTable(), "lcptab", 6, TikzConstants.GREEN_CELL);
        if (childTable != null) {
            tableVisualizer.visualizeTable(drawing, childTable, "cldtab", 6, TikzConstants.BLUE_CELL);
        }
        tableVisualizer.visualizeSuffixIntervals(drawing, tree, treeVisualizer.getStyleMap());
        drawing.flush();
    }
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    private TreeModelBase     _treeModel;
    private HtmlTree          _tree;

    public TreeNode getTreeData()
    {
        TreeNode treeData = new TreeNodeBase("foo-folder", "Inbox", false);

        // construct a set of fake data (normally your data would come from a database)

        // populate Frank's portion of the tree
        TreeNodeBase personNode = new TreeNodeBase("person", "Frank Foo", false);
        personNode.getChildren().add(new TreeNodeBase("foo-folder", "Requires Foo", false));
        TreeNodeBase folderNode = new TreeNodeBase("foo-folder", "Requires Foo Reviewer", false);
        folderNode.getChildren().add(new TreeNodeBase("document", "X050001", true));
        folderNode.getChildren().add(new TreeNodeBase("document", "X050002", true));
        folderNode.getChildren().add(new TreeNodeBase("document", "X050003", true));
        personNode.getChildren().add(folderNode);
        personNode.getChildren().add(new TreeNodeBase("foo-folder", "Requires Foo Recommendation", false));
        folderNode = new TreeNodeBase("foo-folder", "Requires Foo Approval", false);
        folderNode.getChildren().add(new TreeNodeBase("document", "J050001", true));
        folderNode.getChildren().add(new TreeNodeBase("document", "J050002", true));
        folderNode.getChildren().add(new TreeNodeBase("document", "J050003", true));
        folderNode.getChildren().add(new TreeNodeBase("document", "E050011", true));
        folderNode.getChildren().add(new TreeNodeBase("document", "R050002", true));
        folderNode.getChildren().add(new TreeNodeBase("document", "C050003", true));
        personNode.getChildren().add(folderNode);
        folderNode = new TreeNodeBase("bar-folder", "Requires Bar Processing", false);
        folderNode.getChildren().add(new TreeNodeBase("document", "X050003", true));
        folderNode.getChildren().add(new TreeNodeBase("document", "X050011", true));
        folderNode.getChildren().add(new TreeNodeBase("document", "F050002", true));
        folderNode.getChildren().add(new TreeNodeBase("document", "G050003", true));
        personNode.getChildren().add(folderNode);
        folderNode = new TreeNodeBase("bar-folder", "Requires Bar Approval", false);
        folderNode.getChildren().add(new TreeNodeBase("document", "J050006", true));
        folderNode.getChildren().add(new TreeNodeBase("document", "J050007", true));
        personNode.getChildren().add(folderNode);

        treeData.getChildren().add(personNode);

        // populate Betty's portion of the tree
        personNode = new TreeNodeBase("person", "Betty Bar", false);
        personNode.getChildren().add(new TreeNodeBase("foo-folder", "Requires Foo", false));
        folderNode = new TreeNodeBase("foo-folder", "Requires Foo Reviewer", false);
        folderNode.getChildren().add(new TreeNodeBase("document", "X012000", true));
        folderNode.getChildren().add(new TreeNodeBase("document", "X013000", true));
        folderNode.getChildren().add(new TreeNodeBase("document", "X014000", true));
        personNode.getChildren().add(folderNode);
        folderNode = new TreeNodeBase("foo-folder", "Requires Foo Recommendation", false);
        folderNode.getChildren().add(new TreeNodeBase("document", "J010026", true));
        folderNode.getChildren().add(new TreeNodeBase("document", "J020002", true));
        folderNode.getChildren().add(new TreeNodeBase("document", "J030103", true));
        folderNode.getChildren().add(new TreeNodeBase("document", "E030214", true));
        folderNode.getChildren().add(new TreeNodeBase("document", "R020444", true));
        folderNode.getChildren().add(new TreeNodeBase("document", "C010000", true));
        personNode.getChildren().add(folderNode);
        personNode.getChildren().add(new TreeNodeBase("foo-folder", "Requires Foo Approval", false));
        folderNode = new TreeNodeBase("bar-folder", "Requires Bar Processing", false);
        folderNode.getChildren().add(new TreeNodeBase("document", "T052003", true));
        folderNode.getChildren().add(new TreeNodeBase("document", "T020011", true));
        personNode.getChildren().add(folderNode);
        folderNode = new TreeNodeBase("bar-folder", "Requires Bar Approval", false);
        folderNode.getChildren().add(new TreeNodeBase("document", "J010002", true));
        folderNode.getChildren().add(new TreeNodeBase("document", "J030047", true));
        folderNode.getChildren().add(new TreeNodeBase("document", "F030112", true));
        personNode.getChildren().add(folderNode);

        treeData.getChildren().add(personNode);

        return treeData;
    }
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