Examples of ClusterData


Examples of picard.illumina.parser.ClusterData

        int numReads = 0;

        final IlluminaDataProvider dataProvider = factory.makeDataProvider();
        while (dataProvider.hasNext()) {
            final ClusterData cluster = dataProvider.next();

            if(metricACAGTG.BARCODE.equals(cluster.getMatchedBarcode())) {
                ++numReads;
            }

            Assert.assertEquals(cluster.getRead(readStructure.templates.getIndices()[0]).getQualities().length, barcodePosition - 1);
            Assert.assertEquals(cluster.getRead(readStructure.templates.getIndices()[0]).getBases().length, barcodePosition - 1);
        }
        Assert.assertEquals(numReads, metricACAGTG.READS);
        dataProvider.close();
    }
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