}
}
if (fractionMolecularWeights != null) {
updatedVersion.setFractionMolecularWeights(fractionMolecularWeights);
}
updatedVersion.setMaxChargeSearched(new Charge(Charge.PLUS, 4));
updatedVersion.setMinChargeSearched(new Charge(Charge.PLUS, 2));
updatedVersion.setMaxEValue(100.0);
updatedVersion.setHitListLength(100);
updatedVersion.setMinimalChargeForMultipleChargedFragments(new Charge(Charge.PLUS, 3));
updatedVersion.setMaxPeptideLength(20);
updatedVersion.setMinPeptideLength(6);
updatedVersion.setEstimateCharge(true);
updatedVersion.setRemovePrecursor(false);
updatedVersion.setScalePrecursor(false);