Examples of Bond

com.xensource.xenapi.Bond
@author Citrix Systems, Inc.
org.jmol.modelset.Bond
org.jquantlib.instruments.Bond
where are the testcases?!?! - price/yield calculations are cross-checked for consistency. - price/yield calculations are checked against known good values. @author Srinivas Hasti @author Daniel Kong @author Ueli Hofstetter
org.openscience.cdk.Bond
org.sbml.jsbml.ext.multi.Bond
@author Nicolas Rodriguez @version $Rev: 1639 $ @since 1.0 @date 16.10.2013

Examples of com.xensource.xenapi.Bond

        if (mgmtPif == null) {
            String msg = "Unable to find management network for " + _host.uuid;
            s_logger.warn(msg);
            throw new CloudRuntimeException(msg);
        }
        Bond bond = mgmtPifRec.bondSlaveOf;
        if ( !isRefNull(bond) ) {
            String msg = "Management interface is on slave(" +mgmtPifRec.uuid + ") of bond("
                    + bond.getUuid(conn) + ") on host(" +_host.uuid + "), please move management interface to bond!";
            s_logger.warn(msg);
            throw new CloudRuntimeException(msg);
        }
        Network nk =  mgmtPifRec.network;
        Network.Record nkRec = nk.getRecord(conn);

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Examples of com.xensource.xenapi.Bond

                                                "Unsupported configuration.  Network cloud-private has more than one bond.  Network=")
                                        .append(network.uuid).append("; pif=").append(pr.uuid).toString();
                                        s_logger.warn(msg);
                                        return new SetupAnswer(cmd, msg);
                                    }
                                    Bond bond = pr.bondMasterOf.iterator().next();
                                    Set<PIF> slaves = bond.getSlaves(conn);
                                    for (PIF slave : slaves) {
                                        PIF.Record spr = slave.getRecord(conn);
                                        if (spr.management) {
                                            if (!transferManagementNetwork(conn, host, slave, spr, pif)) {
                                                String msg = new StringBuilder(

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Examples of com.xensource.xenapi.Bond

        if (mgmtPif == null) {
            String msg = "Unable to find management network for " + _host.uuid;
            s_logger.warn(msg);
            throw new CloudRuntimeException(msg);
        }
        Bond bond = mgmtPifRec.bondSlaveOf;
        if ( !isRefNull(bond) ) {
            String msg = "Management interface is on slave(" +mgmtPifRec.uuid + ") of bond("
                    + bond.getUuid(conn) + ") on host(" +_host.uuid + "), please move management interface to bond!";
            s_logger.warn(msg);
            throw new CloudRuntimeException(msg);
        }
        Network nk =  mgmtPifRec.network;
        Network.Record nkRec = nk.getRecord(conn);

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Examples of com.xensource.xenapi.Bond

                                                "Unsupported configuration.  Network cloud-private has more than one bond.  Network=")
                                        .append(network.uuid).append("; pif=").append(pr.uuid).toString();
                                        s_logger.warn(msg);
                                        return new SetupAnswer(cmd, msg);
                                    }
                                    Bond bond = pr.bondMasterOf.iterator().next();
                                    Set<PIF> slaves = bond.getSlaves(conn);
                                    for (PIF slave : slaves) {
                                        PIF.Record spr = slave.getRecord(conn);
                                        if (spr.management) {
                                            if (!transferManagementNetwork(conn, host, slave, spr, pif)) {
                                                String msg = new StringBuilder(

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Examples of org.jmol.modelset.Bond

        return;
      bondCount = modelSet.getBondCount();
      connections = new Connection[bondCount + 1];
      Bond[] bonds = modelSet.getBonds();
      for (int i = bondCount; --i >= 0;) {
        Bond b = bonds[i];
        connections[i] = new Connection(b.getAtomIndex1(), b.getAtomIndex2(), b
            .getMad(), b.getColix(), b.getOrder(), b.getEnergy(), b.getShapeVisibilityFlags());
      }
    }

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Examples of org.jmol.modelset.Bond

      for (int i = bondCount; --i >= 0;) {
        Connection c = connections[i];
        int atomCount = modelSet.getAtomCount();
        if (c.atomIndex1 >= atomCount || c.atomIndex2 >= atomCount)
          continue;
        Bond b = modelSet.bondAtoms(modelSet.atoms[c.atomIndex1],
            modelSet.atoms[c.atomIndex2], c.order, c.mad, null, c.energy, true);
        b.setColix(c.colix);
        b.setShapeVisibilityFlags(c.shapeVisibilityFlags);
      }
      for (int i = bondCount; --i >= 0;)
        modelSet.getBondAt(i).setIndex(i);
      viewer.setShapeProperty(JmolConstants.SHAPE_STICKS, "reportAll", null);
    }

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Examples of org.jmol.modelset.Bond

  public void highlightBond(int index, boolean isHover) {
    if (isHover && !isHoverEnabled())
      return;
    BitSet bs = null;
    if (index >= 0) {
      Bond b = modelSet.getBonds()[index];
      int i = b.getAtomIndex2();
      if (!isAtomAssignable(i))
        return;
      bs = BitSetUtil.setBit(i);
      bs.set(b.getAtomIndex1());
    }
    highlight(bs);
    refresh(3, "highlightBond");
  }

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Examples of org.jmol.modelset.Bond

    if (rotateBondIndex < 0)
      return;
    BitSet bsBranch = bsRotateBranch;
    Atom atom1, atom2;
    if (bsBranch == null) {
      Bond b = modelSet.getBonds()[rotateBondIndex];
      atom1 = b.getAtom1();
      atom2 = b.getAtom2();
      undoAction(atom1.index, AtomCollection.TAINT_COORD, true);
      Point3f pt = new Point3f(x, y, (atom1.screenZ + atom2.screenZ) / 2);
      transformManager.unTransformPoint(pt, pt);
      if (atom2.getCovalentBondCount() == 1
          || pt.distance(atom1) < pt.distance(atom2)

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Examples of org.jmol.modelset.Bond

          str = modelSet.atoms[j].getInfo();
        else
          str = LabelToken.formatLabel(viewer, modelSet.atoms[j], null, tokens,
              '\0', indices);
      } else {
        Bond bond = modelSet.getBondAt(j);
        if (asIdentity)
          str = bond.getIdentity();
        else
          str = LabelToken.formatLabel(viewer, bond, tokens, htValues, indices);
      }
      str = TextFormat.formatString(str, "#", (n + 1));
      sout[n++] = str;

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Examples of org.jmol.modelset.Bond

      int i0 = (isAll ? 0 : bs.nextSetBit(0));
      int i1 = viewer.getBondCount();
      for (int i = i0; i >= 0 && i < i1; i = (isAll ? i + 1 : bs
          .nextSetBit(i + 1))) {
        n++;
        Bond bond = modelSet.getBondAt(i);
        switch (tok) {
        case Token.length:
          float fv = bond.getAtom1().distance(bond.getAtom2());
          switch (minmaxtype) {
          case Token.min:
            if (fv < fvMinMax)
              fvMinMax = fv;
            break;
          case Token.max:
            if (fv > fvMinMax)
              fvMinMax = fv;
            break;
          case Token.all:
            vout.add(new Float(fv));
            break;
          case Token.sum2:
          case Token.stddev:
            sum2 += (double) fv * fv;
            // fall through
          case Token.sum:
          default:
            sum += fv;
          }
          break;
        case Token.xyz:
          switch (minmaxtype) {
          case Token.all:
            pt.set(bond.getAtom1());
            pt.add(bond.getAtom2());
            pt.scale(0.5f);
            vout.add(new Point3f(pt));
            break;
          default:
            pt.add(bond.getAtom1());
            pt.add(bond.getAtom2());
            n++;
          }
          break;
        case Token.color:
          Graphics3D.colorPointFromInt(viewer.getColorArgbOrGray(bond
              .getColix()), ptT);
          switch (minmaxtype) {
          case Token.all:
            vout.add(new Point3f(ptT));
            break;

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