Examples of BinaryProtoNetworkDescriptor

org.openbel.framework.core.protonetwork.BinaryProtoNetworkDescriptor
BinaryProtoNetworkDescriptor represents the file descriptor for the binary-encoded proto network. @author Anthony Bargnesi {@code }

Examples of org.openbel.framework.core.protonetwork.BinaryProtoNetworkDescriptor

    /*
     * Reconstitutes the global proto-network.
     */
    private void reconstituteNetwork(final File file) {


        BinaryProtoNetworkDescriptor inputProtoNetworkDesc =
                new BinaryProtoNetworkDescriptor(file);
        ProtoNetworkExternalizer pne = new BinaryProtoNetworkExternalizer();
        ProtoNetwork global = null;


        try {
            global = pne.readProtoNetwork(inputProtoNetworkDesc);

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Examples of org.openbel.framework.core.protonetwork.BinaryProtoNetworkDescriptor

        Collection<ProtoNetworkDescriptor> nds = sizedArrayList(netct);
        for (final File network : networks) {
            final String root = network.getAbsolutePath();
            final String netPath = asPath(root, PROTO_NETWORK_FILENAME);
            final File networkBin = new File(netPath);
            nds.add(new BinaryProtoNetworkDescriptor(networkBin));
        }


        ProtoNetwork ret = p2.stage1Merger(nds);


        new File(artifactPath.getAbsolutePath() + "/merged").mkdirs();

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Examples of org.openbel.framework.core.protonetwork.BinaryProtoNetworkDescriptor

        // bldr.append(protoNetwork);
        // phaseOutput(bldr.toString());


        phaseOutput(format("=== %s ===", getApplicationName()));


        ProtoNetworkDescriptor pnd = new BinaryProtoNetworkDescriptor(
                protoNetwork);


        BinaryProtoNetworkExternalizer bpne =
                new BinaryProtoNetworkExternalizer();
        ProtoNetwork gpn = null;

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