Examples of BELStatement

Examples of org.openbel.bel.model.BELStatement

78
79
80
81
82
83
84
85
86
87
88
        final Set<BELNamespaceDefinition> nsset = constrainedHashSet(2);
        nsset.add(new BELNamespaceDefinition("HGNC", DEFAULT_NS, true));
        nsset.add(new BELNamespaceDefinition("EGID", NS, false));
        final List<BELStatementGroup> sglist = sizedArrayList(1);
        final BELStatementGroup sg = new BELStatementGroup("Example");
        sg.getStatements().add(new BELStatement("p(AKT1) => g(EGID:1024)"));
        sglist.add(sg);
        final BELDocument beldoc = new BELDocument(dh, null, nsset, sglist);

        // convert to common model
        final BELDocumentConverter converter = new BELDocumentConverter();
View Full Code Here

Examples of org.openbel.bel.model.BELStatement

179
180
181
182
183
184
185
186
187
188
189
190
        List<BELStatementGroup> groups = doc.getBelStatementGroups();
        BELStatementGroup group = groups.get(0);
        List<BELStatement> stmts = group.getStatements();
        assertTrue(stmts.size() == 1);

        BELStatement stmt = stmts.get(0);
        List<BELAnnotation> annos = stmt.getAnnotations();
        assertTrue(annos.size() == 1);

        BELAnnotation anno = annos.get(0);
        assertTrue(anno.getValues().size() == 1);
View Full Code Here

Examples of org.openbel.bel.model.BELStatement

225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
        List<BELStatementGroup> groups = doc.getBelStatementGroups();
        BELStatementGroup group = groups.get(0);
        List<BELStatement> stmts = group.getStatements();
        assertTrue(stmts.size() == 1);

        BELStatement stmt = stmts.get(0);

        BELEvidence evidence = stmt.getEvidence();
        assertNotNull(evidence);

        BELCitation citation = stmt.getCitation();
        assertNotNull(citation);

        assertEquals("Evidence\nneeded", evidence.getEvidenceLine());
        assertEquals("PubMed", citation.getType());
        assertEquals("X", citation.getName());
View Full Code Here

Examples of org.openbel.bel.model.BELStatement

2084
2085
2086
2087
2088
2089
2090
2091
2092
2093
2094
                    }

                    final List<BELAnnotation> annotations = new ArrayList<BELAnnotation>(effectiveAnnotations.values());

                    // build statement and keep track of it for validation purposes
                    final BELStatement stmt = new BELStatement(stmtBuilder.toString(), annotations, citationContext, evidenceContext, commentText);
                    stmtlist.add(stmt);

                    // add statement to scoped statement group
                    if (activeStatementGroup != null) {
                        activeStatementGroup.getStatements().add(stmt);
View Full Code Here
TOP
Copyright © 2018 www.massapi.com. All rights reserved.
All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.