Examples of AlgebraicRule

Examples of org.sbml.jsbml.AlgebraicRule

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    assertTrue(M.getReactionCount() == 1);
  }

  @Test
  public void test_Model_addRules() throws ParseException {
    Rule r1 = new AlgebraicRule(2, 4);
    AssignmentRule r2 = new AssignmentRule(2, 4);
    RateRule r3 = new RateRule(2, 4);
    r2.setVariable("r2");
    r3.setVariable("r3");
    r1.setMath(ASTNode.parseFormula("2"));
    r2.setMath(ASTNode.parseFormula("2"));
    r3.setMath(ASTNode.parseFormula("2"));
    M.addRule(r1);
    M.addRule(r2);
    M.addRule(r3);
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Examples of org.sbml.jsbml.AlgebraicRule

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  // TODO: API changes, setVariable function is not in the Rule Class.

  @Test
  public void test_Model_getRules() throws ParseException {
    Rule ar = new AlgebraicRule(2, 4);
    AssignmentRule scr = new AssignmentRule(2, 4);
    AssignmentRule cvr = new AssignmentRule(2, 4);
    AssignmentRule pr = new AssignmentRule(2, 4);
    scr.setVariable("r2");
    cvr.setVariable("r3");
    pr.setVariable("r4");
    ar.setFormula("x + 1");
    scr.setFormula("k * t/(1 + k)");
    cvr.setFormula("0.10 * t");
    pr.setFormula("k3/k2");
    M.addRule(ar);
    M.addRule(scr);
    M.addRule(cvr);
    M.addRule(pr);
    assertTrue(M.getRuleCount() == 4);
    ar = M.getRule(0);
    scr = (AssignmentRule) M.getRule(1);
    cvr = (AssignmentRule) M.getRule(2);
    pr = (AssignmentRule) M.getRule(3);
    assertTrue(ar.getFormula().equals("x+1")); // .equals("x + 1")
    assertTrue(scr.getFormula().equals("k*t/(1+k)")); // .equals("k * t/(1 + k)"));
    assertTrue(cvr.getFormula().equals("0.1*t")); // .equals("0.10 * t"));
    assertTrue(pr.getFormula().equals("k3/k2"));
  }
 
View Full Code Here

Examples of org.sbml.jsbml.AlgebraicRule

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              return parameter;
            } else if (elementName.equals("algebraicRule")
                && list.getSBaseListType().equals(
                    ListOf.Type.listOfRules)) {
              AlgebraicRule rule = (AlgebraicRule) newContextObject;
              model.addRule(rule);

              return rule;
            } else if (elementName.equals("assignmentRule") // TODO: wrong, there are no assignmentRule element, only more specialize rule
                && list.getSBaseListType().equals(
View Full Code Here

Examples of org.sbml.jsbml.AlgebraicRule

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              return initialAssignment;
            } else if (elementName.equals("algebraicRule")
                && list.getSBaseListType().equals(
                    ListOf.Type.listOfRules)) {
              AlgebraicRule rule = (AlgebraicRule) newContextObject;
              model.addRule(rule);

              return rule;
            } else if (elementName.equals("assignmentRule")
                && list.getSBaseListType().equals(
View Full Code Here

Examples of org.sbml.jsbml.AlgebraicRule

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    assertTrue(M.getNumReactions() == 1);
  }

  @Test
  public void test_Model_addRules() throws ParseException {
    Rule r1 = new AlgebraicRule(2, 4);
    AssignmentRule r2 = new AssignmentRule(2, 4);
    RateRule r3 = new RateRule(2, 4);
    r2.setVariable("r2");
    r3.setVariable("r3");
    r1.setMath(ASTNode.parseFormula("2"));
    r2.setMath(ASTNode.parseFormula("2"));
    r3.setMath(ASTNode.parseFormula("2"));
    M.addRule(r1);
    M.addRule(r2);
    M.addRule(r3);
View Full Code Here

Examples of org.sbml.jsbml.AlgebraicRule

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  // TODO : API changes, setVariable function is not in the Rule Class.

  @Test
  public void test_Model_getRules() throws ParseException {
    Rule ar = new AlgebraicRule(2, 4);
    AssignmentRule scr = new AssignmentRule(2, 4);
    AssignmentRule cvr = new AssignmentRule(2, 4);
    AssignmentRule pr = new AssignmentRule(2, 4);
    scr.setVariable("r2");
    cvr.setVariable("r3");
    pr.setVariable("r4");
    ar.setFormula("x + 1");
    scr.setFormula("k * t/(1 + k)");
    cvr.setFormula("0.10 * t");
    pr.setFormula("k3/k2");
    M.addRule(ar);
    M.addRule(scr);
    M.addRule(cvr);
    M.addRule(pr);
    assertTrue(M.getNumRules() == 4);
    ar = M.getRule(0);
    scr = (AssignmentRule) M.getRule(1);
    cvr = (AssignmentRule) M.getRule(2);
    pr = (AssignmentRule) M.getRule(3);
    assertTrue(ar.getFormula().equals("x+1")); // .equals("x + 1")
    assertTrue(scr.getFormula().equals("k*t/(1+k)")); // .equals("k * t/(1 + k)"));
    assertTrue(cvr.getFormula().equals("0.1*t")); // .equals("0.10 * t"));
    assertTrue(pr.getFormula().equals("k3/k2"));
  }
 
View Full Code Here

Examples of org.sbml.jsbml.AlgebraicRule

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              return parameter;
            } else if (elementName.equals("algebraicRule")
                && list.getSBaseListType().equals(
                    ListOf.Type.listOfRules)) {
              AlgebraicRule rule = (AlgebraicRule) newContextObject;
              model.addRule(rule);

              return rule;
            } else if (elementName.equals("assignmentRule") // TODO : wrong, there are no assignmentRule element, only more specialize rule
                && list.getSBaseListType().equals(
View Full Code Here

Examples of org.sbml.jsbml.AlgebraicRule

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              return initialAssignment;
            } else if (elementName.equals("algebraicRule")
                && list.getSBaseListType().equals(
                    ListOf.Type.listOfRules)) {
              AlgebraicRule rule = (AlgebraicRule) newContextObject;
              model.addRule(rule);

              return rule;
            } else if (elementName.equals("assignmentRule")
                && list.getSBaseListType().equals(
View Full Code Here

Examples of org.sbml.jsbml.AlgebraicRule

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    assertTrue(M.getNumReactions() == 1);
  }

  @Test
  public void test_Model_addRules() throws ParseException {
    Rule r1 = new AlgebraicRule(2, 4);
    AssignmentRule r2 = new AssignmentRule(2, 4);
    RateRule r3 = new RateRule(2, 4);
    r2.setVariable("r2");
    r3.setVariable("r3");
    r1.setMath(ASTNode.parseFormula("2"));
    r2.setMath(ASTNode.parseFormula("2"));
    r3.setMath(ASTNode.parseFormula("2"));
    M.addRule(r1);
    M.addRule(r2);
    M.addRule(r3);
View Full Code Here

Examples of org.sbml.jsbml.AlgebraicRule

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  // TODO : API changes, setVariable function is not in the Rule Class.

  @Test
  public void test_Model_getRules() throws ParseException {
    Rule ar = new AlgebraicRule(2, 4);
    AssignmentRule scr = new AssignmentRule(2, 4);
    AssignmentRule cvr = new AssignmentRule(2, 4);
    AssignmentRule pr = new AssignmentRule(2, 4);
    scr.setVariable("r2");
    cvr.setVariable("r3");
    pr.setVariable("r4");
    ar.setFormula("x + 1");
    scr.setFormula("k * t/(1 + k)");
    cvr.setFormula("0.10 * t");
    pr.setFormula("k3/k2");
    M.addRule(ar);
    M.addRule(scr);
    M.addRule(cvr);
    M.addRule(pr);
    assertTrue(M.getNumRules() == 4);
    ar = M.getRule(0);
    scr = (AssignmentRule) M.getRule(1);
    cvr = (AssignmentRule) M.getRule(2);
    pr = (AssignmentRule) M.getRule(3);
    assertTrue(ar.getFormula().equals("x+1")); // .equals("x + 1")
    assertTrue(scr.getFormula().equals("k*t/(1+k)")); // .equals("k * t/(1 + k)"));
    assertTrue(cvr.getFormula().equals("0.1*t")); // .equals("0.10 * t"));
    assertTrue(pr.getFormula().equals("k3/k2"));
  }
 
View Full Code Here
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