Examples of ActualParameter

Examples of org.apache.airavata.commons.gfac.type.ActualParameter

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        return actualParameter;
    }

    public static ActualParameter getInputActualParameter(Parameter parameter, String inputVal) {
        OMElement innerelement = null;
        ActualParameter actualParameter = new ActualParameter();
        if ("String".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(StringParameterType.type);
            ((StringParameterType) actualParameter.getType()).setValue(inputVal);
        } else if ("Double".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(DoubleParameterType.type);
            ((DoubleParameterType) actualParameter.getType()).setValue(new Double(inputVal));
        } else if ("Integer".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(IntegerParameterType.type);
            ((IntegerParameterType) actualParameter.getType()).setValue(new Integer(inputVal));
        } else if ("Float".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(FloatParameterType.type);
            ((FloatParameterType) actualParameter.getType()).setValue(new Float(inputVal));
        } else if ("Boolean".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(BooleanParameterType.type);
            ((BooleanParameterType) actualParameter.getType()).setValue(new Boolean(inputVal));
        } else if ("File".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(FileParameterType.type);
            ((FileParameterType) actualParameter.getType()).setValue(inputVal);
        } else if ("URI".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(URIParameterType.type);
            ((URIParameterType) actualParameter.getType()).setValue(inputVal);
        } else if ("StringArray".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(StringArrayType.type);
            Iterator iterator = Arrays.asList(inputVal.split(",")).iterator();
            int i = 0;
            while (iterator.hasNext()) {
                innerelement = (OMElement) iterator.next();
                ((StringArrayType) actualParameter.getType()).insertValue(i++, innerelement.getText());
            }
        } else if ("DoubleArray".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(DoubleArrayType.type);
            Iterator value =Arrays.asList(inputVal.split(",")).iterator();
            int i = 0;
            while (value.hasNext()) {
                innerelement = (OMElement) value.next();
                ((DoubleArrayType) actualParameter.getType()).insertValue(i++, new Double(innerelement.getText()));
            }
        } else if ("IntegerArray".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(IntegerArrayType.type);
            Iterator value = Arrays.asList(inputVal.split(",")).iterator();
            int i = 0;
            while (value.hasNext()) {
                innerelement = (OMElement) value.next();
                ((IntegerArrayType) actualParameter.getType()).insertValue(i++, new Integer(innerelement.getText()));
            }
        } else if ("FloatArray".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(FloatArrayType.type);
            Iterator value = Arrays.asList(inputVal.split(",")).iterator();
            int i = 0;
            while (value.hasNext()) {
                innerelement = (OMElement) value.next();
                ((FloatArrayType) actualParameter.getType()).insertValue(i++, new Float(innerelement.getText()));
            }
        } else if ("BooleanArray".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(BooleanArrayType.type);
            Iterator value = Arrays.asList(inputVal.split(",")).iterator();
            int i = 0;
            while (value.hasNext()) {
                innerelement = (OMElement) value.next();
                ((BooleanArrayType) actualParameter.getType()).insertValue(i++, new Boolean(innerelement.getText()));
            }
        } else if ("FileArray".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(FileArrayType.type);
            Iterator value = Arrays.asList(inputVal.split(",")).iterator();
            int i = 0;
            while (value.hasNext()) {
                innerelement = (OMElement) value.next();
                ((FileArrayType) actualParameter.getType()).insertValue(i++, innerelement.getText());
            }
        } else if ("URIArray".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(URIArrayType.type);
            Iterator value = Arrays.asList(inputVal.split(",")).iterator();
            int i = 0;
            while (value.hasNext()) {
                innerelement = (OMElement) value.next();
                ((URIArrayType) actualParameter.getType()).insertValue(i++, innerelement.getText());
            }
        }
        return actualParameter;
    }
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Examples of org.apache.airavata.commons.gfac.type.ActualParameter

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    }

    protected MessageContext getInMessageContext() {
        MessageContext inMessage = new MessageContext();

        ActualParameter i1 = new ActualParameter();
        i1.getType().changeType(URIParameterType.type);
        ((URIParameterType) i1.getType()).setValue("file:///tmp/ifile1");
        inMessage.addParameter("i1", i1);

        ActualParameter i2 = new ActualParameter();
        i2.getType().changeType(URIParameterType.type);
        ((URIParameterType) i2.getType()).setValue("file:///tmp/ifile2");
        inMessage.addParameter("i2", i2);

        ActualParameter i3 = new ActualParameter();
        i2.getType().changeType(URIParameterType.type);
        ((URIParameterType) i2.getType()).setValue("///tmp/ifile2");
        inMessage.addParameter("i3", i2);

        ActualParameter simpleArg = new ActualParameter();
        simpleArg.getType().changeType(StringParameterType.type);
        ((StringParameterType) simpleArg.getType()).setValue("argument1");
        inMessage.addParameter("a1", simpleArg);

        ActualParameter nameValueArg = new ActualParameter();
        nameValueArg.getType().changeType(StringParameterType.type);
        ((StringParameterType) nameValueArg.getType()).setValue("name1=value1");
        inMessage.addParameter("nameValueArg", nameValueArg);

        ActualParameter echo_input = new ActualParameter();
        ((StringParameterType) echo_input.getType()).setValue("echo_output=hello");
        inMessage.addParameter("echo_input", echo_input);

        return inMessage;
    }
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Examples of org.apache.airavata.commons.gfac.type.ActualParameter

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    protected MessageContext getOutMessageContext() {
        MessageContext om1 = new MessageContext();

        // TODO: Aint the output parameters are only the name of the files staged out to the gridftp endpoint?
        ActualParameter o1 = new ActualParameter();
        ((StringParameterType) o1.getType()).setValue("tempfile");
        om1.addParameter("o1", o1);

        ActualParameter o2 = new ActualParameter();
        o2.getType().changeType(URIParameterType.type);

        ((URIParameterType) o2.getType()).setValue("http://path/to/upload");
        om1.addParameter("o2", o2);

        return om1;
    }
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Examples of org.apache.airavata.commons.gfac.type.ActualParameter

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          MessageContext inputNew = new MessageContext();
          try {
              MessageContext input = jobExecutionContext.getInMessageContext();
              Set<String> parameters = input.getParameters().keySet();
              for (String paramName : parameters) {
                  ActualParameter actualParameter = (ActualParameter) input.getParameters().get(paramName);
                  String paramValue = MappingFactory.toString(actualParameter);
                  //TODO: Review this with type
                  if ("URI".equals(actualParameter.getType().getType().toString())) {
                      ((URIParameterType) actualParameter.getType()).setValue(stageInputFiles(jobExecutionContext, paramValue));
                  } else if ("URIArray".equals(actualParameter.getType().getType().toString())) {
                      List<String> split = Arrays.asList(paramValue.split(","));
                      List<String> newFiles = new ArrayList<String>();
                      for (String paramValueEach : split) {
                          newFiles.add(stageInputFiles(jobExecutionContext, paramValueEach));
                      }
                      ((URIArrayType) actualParameter.getType()).setValueArray(newFiles.toArray(new String[newFiles.size()]));
                  }
                  inputNew.getParameters().put(paramName, actualParameter);
              }
          } catch (Exception e) {
              log.error(e.getMessage());
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Examples of org.apache.airavata.commons.gfac.type.ActualParameter

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        jobExecutionContext.setApplicationContext(applicationContext);
        applicationContext.setServiceDescription(serv);

        MessageContext inMessage = new MessageContext();

        ActualParameter echo_input = new ActualParameter();
        ((StringParameterType) echo_input.getType()).setValue("ai");
        inMessage.addParameter("molecule_id", echo_input);

        ActualParameter geom_mol2 = new ActualParameter(URIParameterType.type);
        ((URIParameterType) geom_mol2.getType()).setValue("http://ccg-mw1.ncsa.uiuc.edu/cgenff/leoshen/cgenff_project/ai/ai.mol2");
        inMessage.addParameter("geom_mol2", geom_mol2);

        ActualParameter toppar_main_tgz = new ActualParameter(URIParameterType.type);
        ((URIParameterType) toppar_main_tgz.getType()).setValue("/home/gridchem/workflow_script/toppar/cgenff/releases/2b7/main.tgz");
        inMessage.addParameter("toppar_main_tgz", toppar_main_tgz);

        ActualParameter toppar_usr_tgz = new ActualParameter(URIParameterType.type);
        ((URIParameterType) toppar_usr_tgz.getType()).setValue("gsiftp://trestles.sdsc.edu");
        inMessage.addParameter("toppar_usr_tgz", toppar_usr_tgz);

        ActualParameter toppar_mol_str = new ActualParameter(URIParameterType.type);
        ((URIParameterType) toppar_mol_str.getType()).setValue("http://ccg-mw1.ncsa.uiuc.edu/cgenff/leoshen/cgenff_project/ai/toppar/ai.str");
        inMessage.addParameter("toppar_mol_str", toppar_mol_str);

        ActualParameter molecule_dir_in_tgz = new ActualParameter(URIParameterType.type);
        ((URIParameterType) molecule_dir_in_tgz.getType()).setValue("");
        inMessage.addParameter("molecule_dir_in_tgz", molecule_dir_in_tgz);

        ActualParameter GC_UserName = new ActualParameter();
        ((StringParameterType) GC_UserName.getType()).setValue("leoshen");
        inMessage.addParameter("GC_UserName", GC_UserName);

        ActualParameter GC_ProjectName = new ActualParameter();
        ((StringParameterType) GC_ProjectName.getType()).setValue("leoshen");
        inMessage.addParameter("GC_ProjectName", GC_ProjectName);

        ActualParameter GC_WorkflowName = new ActualParameter();
        ((StringParameterType) GC_WorkflowName.getType()).setValue("ai__1339258840");
        inMessage.addParameter("GC_WorkflowName", GC_WorkflowName);

        jobExecutionContext.setInMessageContext(inMessage);

        MessageContext outMessage = new MessageContext();

        ActualParameter opt_freq_input_gjf = new ActualParameter(URIParameterType.type);
        outMessage.addParameter("opt_freq_input_gjf", opt_freq_input_gjf);

        ActualParameter charmm_miminized_crd = new ActualParameter(URIParameterType.type);
        outMessage.addParameter("charmm_miminized_crd", charmm_miminized_crd);

        ActualParameter step1_log = new ActualParameter(URIParameterType.type);
        outMessage.addParameter("step1_log", step1_log);

        ActualParameter molecule_dir_out_tgz = new ActualParameter(URIParameterType.type);
        outMessage.addParameter("molecule_dir_out_tgz", molecule_dir_out_tgz);

        ActualParameter gcvars = new ActualParameter(URIParameterType.type);
        outMessage.addParameter("gcvars", gcvars);

        jobExecutionContext.setOutMessageContext(outMessage);

    }
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Examples of org.apache.airavata.commons.gfac.type.ActualParameter

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        MessageContext inputNew = new MessageContext();
        try {
            MessageContext input = jobExecutionContext.getInMessageContext();
            Set<String> parameters = input.getParameters().keySet();
            for (String paramName : parameters) {
                ActualParameter actualParameter = (ActualParameter) input.getParameters().get(paramName);
                String paramValue = MappingFactory.toString(actualParameter);
                //TODO: Review this with type
                if ("URI".equals(actualParameter.getType().getType().toString())) {
                    ((URIParameterType) actualParameter.getType()).setValue(stageInputFiles(jobExecutionContext, paramValue));
                } else if ("URIArray".equals(actualParameter.getType().getType().toString())) {
                    List<String> split = Arrays.asList(paramValue.split(","));
                    List<String> newFiles = new ArrayList<String>();
                    for (String paramValueEach : split) {
                        newFiles.add(stageInputFiles(jobExecutionContext, paramValueEach));
                    }
                    ((URIArrayType) actualParameter.getType()).setValueArray(newFiles.toArray(new String[newFiles.size()]));
                }
                inputNew.getParameters().put(paramName, actualParameter);
            }
        } catch (Exception e) {
            log.error(e.getMessage());
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Examples of org.apache.airavata.commons.gfac.type.ActualParameter

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        return buf.toString();
    }

    public static ActualParameter getInputActualParameter(Parameter parameter, OMElement element) {
        OMElement innerelement = null;
        ActualParameter actualParameter = new ActualParameter();
        if ("String".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(StringParameterType.type);
            if (!"".equals(element.getText())) {
                ((StringParameterType) actualParameter.getType()).setValue(element.getText());
            } else if (element.getChildrenWithLocalName("value").hasNext()) {
                innerelement = (OMElement) element.getChildrenWithLocalName("value").next();
                ((StringParameterType) actualParameter.getType()).setValue(innerelement.getText());
            } else {
                ((StringParameterType) actualParameter.getType()).setValue("");
            }
        } else if ("Double".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(DoubleParameterType.type);
            if (!"".equals(element.getText())) {
                ((DoubleParameterType) actualParameter.getType()).setValue(new Double(innerelement.getText()));
            } else {
                innerelement = (OMElement) element.getChildrenWithLocalName("value").next();
                ((DoubleParameterType) actualParameter.getType()).setValue(new Double(innerelement.getText()));
            }
        } else if ("Integer".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(IntegerParameterType.type);
            if (!"".equals(element.getText())) {
                ((IntegerParameterType) actualParameter.getType()).setValue(new Integer(element.getText()));
            } else {
                innerelement = (OMElement) element.getChildrenWithLocalName("value").next();
                ((IntegerParameterType) actualParameter.getType()).setValue(new Integer(innerelement.getText()));
            }
        } else if ("Float".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(FloatParameterType.type);
            if (!"".equals(element.getText())) {
                ((FloatParameterType) actualParameter.getType()).setValue(new Float(element.getText()));
            } else {
                innerelement = (OMElement) element.getChildrenWithLocalName("value").next();
                ((FloatParameterType) actualParameter.getType()).setValue(new Float(innerelement.getText()));
            }
        } else if ("Boolean".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(BooleanParameterType.type);
            if (!"".equals(element.getText())) {
                ((BooleanParameterType) actualParameter.getType()).setValue(new Boolean(element.getText()));
            } else {
                innerelement = (OMElement) element.getChildrenWithLocalName("value").next();
                ((BooleanParameterType) actualParameter.getType()).setValue(Boolean.parseBoolean(innerelement.getText()));
            }
        } else if ("File".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(FileParameterType.type);
            if (!"".equals(element.getText())) {
                ((FileParameterType) actualParameter.getType()).setValue(element.getText());
            } else {
                innerelement = (OMElement) element.getChildrenWithLocalName("value").next();
                ((FileParameterType) actualParameter.getType()).setValue(innerelement.getText());
            }
        } else if ("URI".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(URIParameterType.type);
            if (!"".equals(element.getText())) {
                ((URIParameterType) actualParameter.getType()).setValue(element.getText());
            } else if (element.getChildrenWithLocalName("value").hasNext()) {
                innerelement = (OMElement) element.getChildrenWithLocalName("value").next();
                System.out.println(actualParameter.getType().toString());
                log.debug(actualParameter.getType().toString());
                ((URIParameterType) actualParameter.getType()).setValue(innerelement.getText());
            } else {
                ((URIParameterType) actualParameter.getType()).setValue("");
            }
        } else if ("StringArray".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(StringArrayType.type);
            Iterator value = element.getChildrenWithLocalName("value");
            int i = 0;
            if (!"".equals(element.getText())) {
                String[] list = element.getText().split(",");
                for (String arrayValue : list) {
                    ((StringArrayType) actualParameter.getType()).insertValue(i++, arrayValue);
                }
            } else {
                while (value.hasNext()) {
                    innerelement = (OMElement) value.next();
                    ((StringArrayType) actualParameter.getType()).insertValue(i++, innerelement.getText());
                }
            }
        } else if ("DoubleArray".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(DoubleArrayType.type);
            Iterator value = element.getChildrenWithLocalName("value");
            int i = 0;
            if (!"".equals(element.getText())) {
                String[] list = element.getText().split(",");
                for (String arrayValue : list) {
                    ((DoubleArrayType) actualParameter.getType()).insertValue(i++, new Double(arrayValue));
                }
            } else {
                while (value.hasNext()) {
                    innerelement = (OMElement) value.next();
                    ((DoubleArrayType) actualParameter.getType()).insertValue(i++, new Double(innerelement.getText()));
                }
            }

        } else if ("IntegerArray".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(IntegerArrayType.type);
            Iterator value = element.getChildrenWithLocalName("value");
            int i = 0;
            if (!"".equals(element.getText())) {
                String[] list = element.getText().split(",");
                for (String arrayValue : list) {
                    ((IntegerArrayType) actualParameter.getType()).insertValue(i++, new Integer(arrayValue));
                }
            } else {
                while (value.hasNext()) {
                    innerelement = (OMElement) value.next();
                    ((IntegerArrayType) actualParameter.getType()).insertValue(i++, new Integer(innerelement.getText()));
                }
            }
        } else if ("FloatArray".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(FloatArrayType.type);
            Iterator value = element.getChildrenWithLocalName("value");
            int i = 0;
            if (!"".equals(element.getText())) {
                String[] list = element.getText().split(",");
                for (String arrayValue : list) {
                    ((FloatArrayType) actualParameter.getType()).insertValue(i++, new Float(arrayValue));
                }
            } else {

                while (value.hasNext()) {
                    innerelement = (OMElement) value.next();
                    ((FloatArrayType) actualParameter.getType()).insertValue(i++, new Float(innerelement.getText()));
                }
            }
        } else if ("BooleanArray".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(BooleanArrayType.type);
            Iterator value = element.getChildrenWithLocalName("value");
            int i = 0;
            if (!"".equals(element.getText())) {
                String[] list = element.getText().split(",");
                for (String arrayValue : list) {
                    ((BooleanArrayType) actualParameter.getType()).insertValue(i++, new Boolean(arrayValue));
                }
            } else {

                while (value.hasNext()) {
                    innerelement = (OMElement) value.next();
                    ((BooleanArrayType) actualParameter.getType()).insertValue(i++, new Boolean(innerelement.getText()));
                }
            }
        } else if ("FileArray".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(FileArrayType.type);
            Iterator value = element.getChildrenWithLocalName("value");
            int i = 0;
            if (!"".equals(element.getText())) {
                String[] list = element.getText().split(",");
                for (String arrayValue : list) {
                    ((FileArrayType) actualParameter.getType()).insertValue(i++, arrayValue);
                }
            } else {

                while (value.hasNext()) {
                    innerelement = (OMElement) value.next();
                    ((FileArrayType) actualParameter.getType()).insertValue(i++, innerelement.getText());
                }
            }
        } else if ("URIArray".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(URIArrayType.type);
            Iterator value = element.getChildrenWithLocalName("value");
            int i = 0;
            if (!"".equals(element.getText())) {
                String[] list = element.getText().split(",");
                for (String arrayValue : list) {
                    ((URIArrayType) actualParameter.getType()).insertValue(i++, arrayValue);
                }
            } else {

                while (value.hasNext()) {
                    innerelement = (OMElement) value.next();
                    ((URIArrayType) actualParameter.getType()).insertValue(i++, innerelement.getText());
                }
            }
        }
        return actualParameter;
    }
View Full Code Here

Examples of org.apache.airavata.commons.gfac.type.ActualParameter

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        return actualParameter;
    }

    public static ActualParameter getInputActualParameter(Parameter parameter, String inputVal) {
        OMElement innerelement = null;
        ActualParameter actualParameter = new ActualParameter();
        if ("String".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(StringParameterType.type);
            ((StringParameterType) actualParameter.getType()).setValue(inputVal);
        } else if ("Double".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(DoubleParameterType.type);
            ((DoubleParameterType) actualParameter.getType()).setValue(new Double(inputVal));
        } else if ("Integer".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(IntegerParameterType.type);
            ((IntegerParameterType) actualParameter.getType()).setValue(new Integer(inputVal));
        } else if ("Float".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(FloatParameterType.type);
            ((FloatParameterType) actualParameter.getType()).setValue(new Float(inputVal));
        } else if ("Boolean".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(BooleanParameterType.type);
            ((BooleanParameterType) actualParameter.getType()).setValue(new Boolean(inputVal));
        } else if ("File".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(FileParameterType.type);
            ((FileParameterType) actualParameter.getType()).setValue(inputVal);
        } else if ("URI".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(URIParameterType.type);
            ((URIParameterType) actualParameter.getType()).setValue(inputVal);
        } else if ("StringArray".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(StringArrayType.type);
            Iterator iterator = Arrays.asList(inputVal.split(",")).iterator();
            int i = 0;
            while (iterator.hasNext()) {
                innerelement = (OMElement) iterator.next();
                ((StringArrayType) actualParameter.getType()).insertValue(i++, innerelement.getText());
            }
        } else if ("DoubleArray".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(DoubleArrayType.type);
            Iterator value = Arrays.asList(inputVal.split(",")).iterator();
            int i = 0;
            while (value.hasNext()) {
                innerelement = (OMElement) value.next();
                ((DoubleArrayType) actualParameter.getType()).insertValue(i++, new Double(innerelement.getText()));
            }
        } else if ("IntegerArray".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(IntegerArrayType.type);
            Iterator value = Arrays.asList(inputVal.split(",")).iterator();
            int i = 0;
            while (value.hasNext()) {
                innerelement = (OMElement) value.next();
                ((IntegerArrayType) actualParameter.getType()).insertValue(i++, new Integer(innerelement.getText()));
            }
        } else if ("FloatArray".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(FloatArrayType.type);
            Iterator value = Arrays.asList(inputVal.split(",")).iterator();
            int i = 0;
            while (value.hasNext()) {
                innerelement = (OMElement) value.next();
                ((FloatArrayType) actualParameter.getType()).insertValue(i++, new Float(innerelement.getText()));
            }
        } else if ("BooleanArray".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(BooleanArrayType.type);
            Iterator value = Arrays.asList(inputVal.split(",")).iterator();
            int i = 0;
            while (value.hasNext()) {
                innerelement = (OMElement) value.next();
                ((BooleanArrayType) actualParameter.getType()).insertValue(i++, new Boolean(innerelement.getText()));
            }
        } else if ("FileArray".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(FileArrayType.type);
            Iterator value = Arrays.asList(inputVal.split(",")).iterator();
            int i = 0;
            while (value.hasNext()) {
                innerelement = (OMElement) value.next();
                ((FileArrayType) actualParameter.getType()).insertValue(i++, innerelement.getText());
            }
        } else if ("URIArray".equals(parameter.getParameterType().getName())) {
            actualParameter = new ActualParameter(URIArrayType.type);
            Iterator value = Arrays.asList(inputVal.split(",")).iterator();
            int i = 0;
            while (value.hasNext()) {
                innerelement = (OMElement) value.next();
                ((URIArrayType) actualParameter.getType()).insertValue(i++, innerelement.getText());
            }
        }
        return actualParameter;
    }
View Full Code Here

Examples of org.apache.airavata.commons.gfac.type.ActualParameter

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                    Map<String, Object> output = jobExecutionContext.getOutMessageContext().getParameters();
                    Set<String> keys = output.keySet();
                    for (String paramName : keys) {
                        ActualParameter actualParameter = (ActualParameter) output.get(paramName);
                        if ("URIArray".equals(actualParameter.getType().getType().toString())) {
                            URI outputURI = GFacUtils.createGsiftpURI(endpoint, app.getOutputDataDirectory());
                            List<String> outputList = ftp.listDir(outputURI, gssCred);
                            String[] valueList = outputList.toArray(new String[outputList.size()]);
                            ((URIArrayType) actualParameter.getType()).setValueArray(valueList);
                            // why to instantiate new instance?
//                            stringMap = new HashMap<String, ActualParameter>();
                            stringMap.put(paramName, actualParameter);
                        }else if ("StringArray".equals(actualParameter.getType().getType().toString())) {
                            String[] valueList = OutputUtils.parseStdoutArray(stdout, paramName);
                            ((StringArrayType) actualParameter.getType()).setValueArray(valueList);
//                            stringMap = new HashMap<String, ActualParameter>();
                            stringMap.put(paramName, actualParameter);
                        } else if ("URI".equals(actualParameter.getType().getType().toString())) {
                            URI outputURI = GFacUtils.createGsiftpURI(endpoint, app.getOutputDataDirectory());
                              List<String> outputList = ftp.listDir(outputURI, gssCred);
              if (outputList.size() == 0 || outputList.get(0).isEmpty()) {
                stringMap = OutputUtils.fillOutputFromStdout(output, stdout, stderr);
              } else {
                String valueList = outputList.get(0);
                ((URIParameterType) actualParameter.getType()).setValue(valueList);
                stringMap = new HashMap<String, ActualParameter>();
                stringMap.put(paramName, actualParameter);
              }
                        }
                        else if ("String".equals(actualParameter.getType().getType().toString())) {
                          String path = app.getOutputDataDirectory()+"/"+((StringParameterType) actualParameter.getType()).getValue();
                            URI outputURI = GFacUtils.createGsiftpURI(endpoint, path);
                            ((StringParameterType) actualParameter.getType()).setValue(outputURI.toString());
//                            stringMap = new HashMap<String, ActualParameter>();
                            stringMap.put(paramName, actualParameter);
                        }
                        else {
                            // This is to handle exception during the output parsing.
View Full Code Here

Examples of org.apache.airavata.commons.gfac.type.ActualParameter

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        MessageContext outputNew = new MessageContext();
        MessageContext output = jobExecutionContext.getOutMessageContext();
        Map<String, Object> parameters = output.getParameters();
        for (String paramName : parameters.keySet()) {
            ActualParameter actualParameter = (ActualParameter) parameters
                    .get(paramName);

            GridFtp ftp = new GridFtp();
            GSSCredential gssCred = ((GSISecurityContext)jobExecutionContext.getSecurityContext(GSISecurityContext.GSI_SECURITY_CONTEXT)).getGssCredentials();
            try {
                if ("URI".equals(actualParameter.getType().getType().toString())) {
                    for (String endpoint : gridFTPEndpointArray) {
                        ((URIParameterType) actualParameter.getType()).setValue(doStaging(outputFileStagingPath,
                                MappingFactory.toString(actualParameter), ftp, gssCred, endpoint));
                    }
                } else if ("URIArray".equals(actualParameter.getType().getType().toString())) {
                    List<String> split = Arrays.asList(MappingFactory.toString(actualParameter).split(","));
                    List<String> newFiles = new ArrayList<String>();
                    for (String endpoint : gridFTPEndpointArray) {
                        for (String paramValueEach : split) {
                            newFiles.add(doStaging(outputFileStagingPath, paramValueEach, ftp, gssCred, endpoint));
                        }
                        ((URIArrayType) actualParameter.getType()).setValueArray(newFiles.toArray(new String[newFiles.size()]));
                    }

                }
            } catch (URISyntaxException e) {
                log.error(e.getMessage());
View Full Code Here
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