package versusSNP.gui.dialogs;
import java.awt.GridLayout;
import javax.swing.JCheckBox;
import javax.swing.JComboBox;
import javax.swing.JLabel;
import javax.swing.JOptionPane;
import javax.swing.JPanel;
import javax.swing.JTextField;
import versusSNP.Parameter;
import versusSNP.Size;
import versusSNP.blast.BlastExecutor;
import versusSNP.gui.UICaption;
import versusSNP.util.action.SelectAction;
import versusSNP.util.struct.MyInteger;
public class RunBlastDialog extends JOptionPane implements GenericDialog {
private static final long serialVersionUID = -7497324116818319281L;
private JComboBox selector1;
private JComboBox selector2;
private JComboBox selector3;
private JComboBox selector4;
private MyInteger id1, id2;
private JTextField txtThresholds;
private JCheckBox cbFilters;
public RunBlastDialog(String[] genomeNames) {
super();
id1 = new MyInteger(0);
id2 = new MyInteger(1);
selector1 = new JComboBox(genomeNames);
selector2 = new JComboBox(genomeNames);
selector3 = new JComboBox(new Object[]{"BLASTN"});
selector4 = new JComboBox(BlastExecutor.MATRICES);
txtThresholds = new JTextField(Parameter.blast_run_thresholds);
cbFilters = new JCheckBox(UICaption.dialog_label_run_blast_filters);
txtThresholds.setToolTipText(UICaption.tooltip_label_run_blast_thresholds);
cbFilters.setToolTipText(UICaption.tooltip_label_run_blast_filters);
selector1.setSelectedIndex(id1.intValue());
selector2.setSelectedIndex(id2.intValue());
selector4.setSelectedItem(Parameter.blast_run_matrix);
selector1.setPreferredSize(Size.dialog_combobox_selector);
selector2.setPreferredSize(Size.dialog_combobox_selector);
selector3.setPreferredSize(Size.dialog_combobox_selector);
selector4.setPreferredSize(Size.dialog_combobox_selector);
selector1.addActionListener(new SelectAction(id1));
selector2.addActionListener(new SelectAction(id2));
}
@Override
public int showDialog() {
JPanel panel = new JPanel(new GridLayout(1,2));
panel.add(new JLabel(UICaption.dialog_label_run_blast_thresholds));
panel.add(txtThresholds);
Object[] options = {UICaption.dialog_option_ok, UICaption.dialog_option_cancel};
return showOptionDialog(null, new Object[] {
new JLabel(UICaption.dialog_label_querysubjectselect_query),
selector1,
new JLabel(UICaption.dialog_label_querysubjectselect_subject),
selector2,
new JLabel(UICaption.dialog_label_run_blast_program),
selector3,
new JLabel(UICaption.dialog_label_run_blast_matrix),
selector4,
panel, cbFilters },
UICaption.dialog_caption_run_blast,
JOptionPane.OK_CANCEL_OPTION,
JOptionPane.PLAIN_MESSAGE,
null, options, options[0]);
}
public int getId1() {
return id1.intValue();
}
public int getId2() {
return id2.intValue();
}
public int[] getIds() {
return new int[]{id1.intValue(), id2.intValue()};
}
public String getMatrix() {
return (String) selector4.getSelectedItem();
}
public String getThresholds() {
return txtThresholds.getText();
}
public boolean hasFilters() {
return cbFilters.isSelected();
}
public boolean checkThresholdsFormat() {
return BlastExecutor.checkThresholdsFormat(txtThresholds.getText());
}
}