Package net.imglib2.view

Source Code of net.imglib2.view.RandomAccessTest

/*
* #%L
* ImgLib2: a general-purpose, multidimensional image processing library.
* %%
* Copyright (C) 2009 - 2014 Stephan Preibisch, Tobias Pietzsch, Barry DeZonia,
* Stephan Saalfeld, Albert Cardona, Curtis Rueden, Christian Dietz, Jean-Yves
* Tinevez, Johannes Schindelin, Lee Kamentsky, Larry Lindsey, Grant Harris,
* Mark Hiner, Aivar Grislis, Martin Horn, Nick Perry, Michael Zinsmaier,
* Steffen Jaensch, Jan Funke, Mark Longair, and Dimiter Prodanov.
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* 1. Redistributions of source code must retain the above copyright notice,
*    this list of conditions and the following disclaimer.
* 2. Redistributions in binary form must reproduce the above copyright notice,
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* CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
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package net.imglib2.view;

import static org.junit.Assert.assertTrue;
import net.imglib2.RandomAccess;
import net.imglib2.img.Img;
import net.imglib2.img.array.ArrayImgFactory;
import net.imglib2.type.numeric.integer.UnsignedByteType;

import org.junit.Assert;
import org.junit.Before;
import org.junit.Test;

/**
* TODO
*
*/
public class RandomAccessTest
{
  Img< UnsignedByteType > img;

  @Before
  public void setUp()
  {
    final long[] dimension = new long[] { 100, 60, 10, 30, 50 };
    img = new ArrayImgFactory< UnsignedByteType >().create( dimension, new UnsignedByteType() );
  }

  @Test
  public void testRandomAccess()
  {
    final RandomAccess< UnsignedByteType > a = img.randomAccess();

    final long[] pos = new long[] { 28, 30, 5, 5, 12 };
    final long[] dist = new long[] { 2, 3, 4, 2, 1 };

    testlocalize( a, pos );
    testfwd( a, pos );
    testbck( a, pos );
    testmove( a, pos, 3 );
    testmove( a, pos, dist );
  }

  @Test
  public void testFullSourceMapMixedAccess()
  {
    final long[] offset = new long[] { 1, 10, 0, -5 };
    final long[] dim = new long[] { 10, 10, 10, 10 };
    final RandomAccess< UnsignedByteType > a = Views.offsetInterval( Views.invertAxis( Views.hyperSlice( img, 2, 2 ), 3 ), offset, dim ).randomAccess();

    assertTrue( FullSourceMapMixedRandomAccess.class.isInstance( a ) );

    final long[] pos = new long[] { 28, 30, 2, 15 };
    final long[] dist = new long[] { 2, 3, 4, 1 };

    testlocalize( a, pos );
    testfwd( a, pos );
    testbck( a, pos );
    testmove( a, pos, 3 );
    testmove( a, pos, -2 );
    testmove( a, pos, dist );
  }

  public < T > void testlocalize( final RandomAccess< T > a, final long[] pos )
  {
    final long[] loc = new long[ pos.length ];
    final long[] expected = pos.clone();

    a.setPosition( pos );
    a.localize( loc );
    Assert.assertArrayEquals( expected, loc );

    for ( int d = 0; d < a.numDimensions(); ++d )
    {
      Assert.assertTrue( expected[ d ] == a.getLongPosition( d ) );
      Assert.assertTrue( expected[ d ] == a.getIntPosition( d ) );
      Assert.assertTrue( expected[ d ] == ( long ) a.getFloatPosition( d ) );
      Assert.assertTrue( expected[ d ] == ( long ) a.getDoublePosition( d ) );
    }
  }

  public < T > void testfwd( final RandomAccess< T > a, final long[] pos )
  {
    final long[] loc = new long[ pos.length ];
    final long[] expected = new long[ pos.length ];

    for ( int d = 0; d < a.numDimensions(); ++d )
    {
      a.setPosition( pos );
      a.fwd( d );
      a.localize( loc );

      for ( int i = 0; i < pos.length; ++i )
        expected[ i ] = pos[ i ];
      expected[ d ] += 1;

      Assert.assertArrayEquals( expected, loc );
    }
  }

  public < T > void testbck( final RandomAccess< T > a, final long[] pos )
  {
    final long[] loc = new long[ pos.length ];
    final long[] expected = new long[ pos.length ];

    for ( int d = 0; d < a.numDimensions(); ++d )
    {
      a.setPosition( pos );
      a.bck( d );
      a.localize( loc );

      for ( int i = 0; i < pos.length; ++i )
        expected[ i ] = pos[ i ];
      expected[ d ] -= 1;

      Assert.assertArrayEquals( expected, loc );
    }
  }

  public < T > void testmove( final RandomAccess< T > a, final long[] pos, final long distance )
  {
    final long[] loc = new long[ pos.length ];
    final long[] expected = new long[ pos.length ];

    for ( int d = 0; d < a.numDimensions(); ++d )
    {
      a.setPosition( pos );
      a.move( distance, d );
      a.localize( loc );

      for ( int i = 0; i < pos.length; ++i )
        expected[ i ] = pos[ i ];
      expected[ d ] += distance;

      Assert.assertArrayEquals( expected, loc );
    }
  }

  public < T > void testmove( final RandomAccess< T > a, final long[] pos, final long[] distance )
  {
    final long[] loc = new long[ pos.length ];
    final long[] expected = new long[ pos.length ];

    for ( int d = 0; d < pos.length; ++d )
      expected[ d ] = pos[ d ] + distance[ d ];

    a.setPosition( pos );
    a.move( distance );
    a.localize( loc );

    Assert.assertArrayEquals( expected, loc );
  }
}
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