Package net.imglib2.img.list

Source Code of net.imglib2.img.list.AbstractListImg

/*
* #%L
* ImgLib2: a general-purpose, multidimensional image processing library.
* %%
* Copyright (C) 2009 - 2014 Stephan Preibisch, Tobias Pietzsch, Barry DeZonia,
* Stephan Saalfeld, Albert Cardona, Curtis Rueden, Christian Dietz, Jean-Yves
* Tinevez, Johannes Schindelin, Lee Kamentsky, Larry Lindsey, Grant Harris,
* Mark Hiner, Aivar Grislis, Martin Horn, Nick Perry, Michael Zinsmaier,
* Steffen Jaensch, Jan Funke, Mark Longair, and Dimiter Prodanov.
* %%
* Redistribution and use in source and binary forms, with or without
* modification, are permitted provided that the following conditions are met:
*
* 1. Redistributions of source code must retain the above copyright notice,
*    this list of conditions and the following disclaimer.
* 2. Redistributions in binary form must reproduce the above copyright notice,
*    this list of conditions and the following disclaimer in the documentation
*    and/or other materials provided with the distribution.
*
* THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
* AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
* IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
* ARE DISCLAIMED. IN NO EVENT SHALL THE COPYRIGHT HOLDERS OR CONTRIBUTORS BE
* LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL, EXEMPLARY, OR
* CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT OF
* SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS; OR BUSINESS
* INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN
* CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE)
* ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
* POSSIBILITY OF SUCH DAMAGE.
* #L%
*/

package net.imglib2.img.list;

import java.util.ArrayList;

import net.imglib2.FlatIterationOrder;
import net.imglib2.img.AbstractImg;
import net.imglib2.img.Img;
import net.imglib2.type.Type;
import net.imglib2.util.IntervalIndexer;

/**
* Abstract base class for {@link Img} that store pixels in a single linear
* array (an {@link ArrayList} or similar).In principle, the number of entities
* stored is limited to {@link Integer#MAX_VALUE}.
*
* Derived classes need to implement the {@link #get(int)} and
* {@link #set(int, Object)} methods that are used by accessors to access
* pixels. These could be implemented to fetch pixels from an {@link ArrayList},
* create them on the fly, cache to disk, etc.
*
* @param <T>
*            The value type of the pixels. You can us {@link Type}s or
*            arbitrary {@link Object}s. If you use non-{@link Type} pixels,
*            note, that you cannot use {@link Type#set(Type)} to change the
*            value stored in every reference. Instead, you can use the
*            {@link ListCursor#set(Object)} and
*            {@link ListRandomAccess#set(Object)} methods to alter pixels.
*
* @author Stephan Preibisch
* @author Stephan Saalfeld
* @author Tobias Pietzsch <tobias.pietzsch@gmail.com>
*/
public abstract class AbstractListImg< T > extends AbstractImg< T >
{
  final protected int[] step;

  final protected int[] dim;

  protected AbstractListImg( final long[] dim )
  {
    super( dim );

    this.dim = new int[ n ];
    for ( int d = 0; d < n; ++d )
      this.dim[ d ] = ( int ) dim[ d ];

    step = new int[ n ];
    IntervalIndexer.createAllocationSteps( this.dim, step );
  }

  protected abstract T get( final int index );

  protected abstract void set( final int index, final T value );

  @Override
  public ListCursor< T > cursor()
  {
    return new ListCursor< T >( this );
  }

  @Override
  public ListLocalizingCursor< T > localizingCursor()
  {
    return new ListLocalizingCursor< T >( this );
  }

  @Override
  public ListRandomAccess< T > randomAccess()
  {
    return new ListRandomAccess< T >( this );
  }

  @Override
  public ListImgFactory< T > factory()
  {
    return new ListImgFactory< T >();
  }

  @Override
  public FlatIterationOrder iterationOrder()
  {
    return new FlatIterationOrder( this );
  }
}
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