/*
* Copyright (c) 2007-2012 The Broad Institute, Inc.
* SOFTWARE COPYRIGHT NOTICE
* This software and its documentation are the copyright of the Broad Institute, Inc. All rights are reserved.
*
* This software is supplied without any warranty or guaranteed support whatsoever. The Broad Institute is not responsible for its use, misuse, or functionality.
*
* This software is licensed under the terms of the GNU Lesser General Public License (LGPL),
* Version 2.1 which is available at http://www.opensource.org/licenses/lgpl-2.1.php.
*/
/*
* To change this template, choose Tools | Templates
* and open the template in the editor.
*/
package org.broad.igv.sam;
import org.broad.igv.sam.reader.FeatureIndex;
import org.broad.igv.util.TestUtils;
import org.junit.AfterClass;
import org.junit.BeforeClass;
import org.junit.Test;
import java.io.File;
import static junit.framework.Assert.assertTrue;
/**
* @author jrobinso
*/
public class SamIndexTest {
File f = new File(TestUtils.LARGE_DATA_DIR + "snp130.bedz.sai");
public SamIndexTest() {
}
@BeforeClass
public static void setUpClass() throws Exception {
}
@AfterClass
public static void tearDownClass() throws Exception {
}
/**
* Test of getIndexedChromosomes method, of class SamIndex.
*/
@Test
public void testGetIndexedChromosomes() {
FeatureIndex idx = new FeatureIndex(f);
assertTrue(idx.getIndexedChromosomes().size() > 0);
}
/**
* Test of add method, of class SamIndex.
*/
@Test
public void testAdd() {
}
/**
* Test of getTileDef method, of class SamIndex.
*/
@Test
public void testGetTileDef() {
}
/**
* Test of store method, of class SamIndex.
*/
@Test
public void testStore() throws Exception {
}
/**
* Test of getTileWidth method, of class SamIndex.
*/
@Test
public void testGetTileWidth() {
}
}