/*
* Copyright (c) 2007-2011 by The Broad Institute of MIT and Harvard. All Rights Reserved.
*
* This software is licensed under the terms of the GNU Lesser General Public License (LGPL),
* Version 2.1 which is available at http://www.opensource.org/licenses/lgpl-2.1.php.
*
* THE SOFTWARE IS PROVIDED "AS IS." THE BROAD AND MIT MAKE NO REPRESENTATIONS OR
* WARRANTES OF ANY KIND CONCERNING THE SOFTWARE, EXPRESS OR IMPLIED, INCLUDING,
* WITHOUT LIMITATION, WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR
* PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS, WHETHER
* OR NOT DISCOVERABLE. IN NO EVENT SHALL THE BROAD OR MIT, OR THEIR RESPECTIVE
* TRUSTEES, DIRECTORS, OFFICERS, EMPLOYEES, AND AFFILIATES BE LIABLE FOR ANY DAMAGES
* OF ANY KIND, INCLUDING, WITHOUT LIMITATION, INCIDENTAL OR CONSEQUENTIAL DAMAGES,
* ECONOMIC DAMAGES OR INJURY TO PROPERTY AND LOST PROFITS, REGARDLESS OF WHETHER
* THE BROAD OR MIT SHALL BE ADVISED, SHALL HAVE OTHER REASON TO KNOW, OR IN FACT
* SHALL KNOW OF THE POSSIBILITY OF THE FOREGOING.
*/
package org.broad.igv.util;
/**
* Created by IntelliJ IDEA.
* User: jesse
* Date: Jan 19, 2010
* Time: 5:30:36 PM
* To change this template use File | Settings | File Templates.
*/
import org.broad.igv.exceptions.DataLoadException;
import java.io.File;
import java.io.FileInputStream;
import java.io.InputStream;
import java.security.MessageDigest;
public class MD5Checksum {
private static byte[] createChecksum(String filename) throws
Exception {
InputStream fis = new FileInputStream(filename);
byte[] buffer = new byte[1024];
MessageDigest complete = MessageDigest.getInstance("MD5");
int numRead;
do {
numRead = fis.read(buffer);
if (numRead > 0) {
complete.update(buffer, 0, numRead);
}
} while (numRead != -1);
fis.close();
return complete.digest();
}
public static String getMD5Checksum(String filename) throws Exception {
File fileName = new File(filename);
//TODO Make a better output file naming convention.
if (fileName.isFile()) {
byte[] b = createChecksum(filename);
String result = "";
for (int i = 0; i < b.length; i++) {
result +=
Integer.toString((b[i] & 0xff) + 0x100, 16).substring(1);
}
return result;
}
throw new DataLoadException("No file found", filename);
}
}