/*
* Copyright (c) 2007-2011 by The Broad Institute of MIT and Harvard. All Rights Reserved.
*
* This software is licensed under the terms of the GNU Lesser General Public License (LGPL),
* Version 2.1 which is available at http://www.opensource.org/licenses/lgpl-2.1.php.
*
* THE SOFTWARE IS PROVIDED "AS IS." THE BROAD AND MIT MAKE NO REPRESENTATIONS OR
* WARRANTES OF ANY KIND CONCERNING THE SOFTWARE, EXPRESS OR IMPLIED, INCLUDING,
* WITHOUT LIMITATION, WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR
* PURPOSE, NONINFRINGEMENT, OR THE ABSENCE OF LATENT OR OTHER DEFECTS, WHETHER
* OR NOT DISCOVERABLE. IN NO EVENT SHALL THE BROAD OR MIT, OR THEIR RESPECTIVE
* TRUSTEES, DIRECTORS, OFFICERS, EMPLOYEES, AND AFFILIATES BE LIABLE FOR ANY DAMAGES
* OF ANY KIND, INCLUDING, WITHOUT LIMITATION, INCIDENTAL OR CONSEQUENTIAL DAMAGES,
* ECONOMIC DAMAGES OR INJURY TO PROPERTY AND LOST PROFITS, REGARDLESS OF WHETHER
* THE BROAD OR MIT SHALL BE ADVISED, SHALL HAVE OTHER REASON TO KNOW, OR IN FACT
* SHALL KNOW OF THE POSSIBILITY OF THE FOREGOING.
*/
/*
* To change this template, choose Tools | Templates
* and open the template in the editor.
*/
package org.broad.igv.ui.action;
import org.broad.igv.track.AttributeManager;
import org.broad.igv.ui.AttributeSelectionDialog;
import org.broad.igv.ui.IGV;
import org.broad.igv.ui.UIConstants;
import org.broad.igv.ui.util.UIUtilities;
import javax.swing.*;
import java.awt.event.ActionEvent;
import java.util.ArrayList;
import java.util.List;
/**
* @author jrobinso
*/
public class GroupTracksMenuAction extends MenuAction {
//static Logger log = Logger.getLogger(GroupTracksMenuAction.class);
IGV mainFrame;
public GroupTracksMenuAction(String label, int mnemonic, IGV mainFrame) {
super(label, null, mnemonic);
this.mainFrame = mainFrame;
}
@Override
public void actionPerformed(ActionEvent e) {
doGroupBy();
}
final public void doGroupBy() {
UIUtilities.invokeOnEventThread(new Runnable() {
public void run() {
final AttributeSelectionDialog dlg = new AttributeSelectionDialog(mainFrame.getMainFrame(), true);
List<String> attributeKeys = AttributeManager.getInstance().getVisibleAttributes();
// Sorting disabled -- order will match the order in the panel. If sorting is desired make a copy
// of the array so the panel is not affected.
//if (attributeKeys != null) {
// Collections.sort(attributeKeys,
// AttributeManager.getInstance().getAttributeComparator());
//}
ArrayList<String> selections = new ArrayList(attributeKeys);
selections.add(0, "None");
String[] selArray = selections.toArray(new String[]{});
dlg.setModel(new javax.swing.DefaultComboBoxModel(selArray));
dlg.setDefaultCloseOperation(JDialog.DISPOSE_ON_CLOSE);
String currentSelection = IGV.getInstance().getGroupByAttribute();
if (currentSelection == null) {
dlg.setSelectedIndex(0);
} else {
dlg.setSelectedItem(currentSelection);
}
dlg.setVisible(true);
if (!dlg.isCanceled()) {
int selIndex = dlg.getSelectedIndex();
String selectedAttribute = (selIndex == 0 ? null : selArray[selIndex]);
IGV.getInstance().setGroupByAttribute(selectedAttribute);
mainFrame.doRefresh();
}
}
});
}
}