/*
* Copyright (c) 2007-2012 The Broad Institute, Inc.
* SOFTWARE COPYRIGHT NOTICE
* This software and its documentation are the copyright of the Broad Institute, Inc. All rights are reserved.
*
* This software is supplied without any warranty or guaranteed support whatsoever. The Broad Institute is not responsible for its use, misuse, or functionality.
*
* This software is licensed under the terms of the GNU Lesser General Public License (LGPL),
* Version 2.1 which is available at http://www.opensource.org/licenses/lgpl-2.1.php.
*/
/*
* Created by JFormDesigner on Mon Aug 06 15:33:57 EDT 2012
*/
package org.broad.igv.cli_plugin.ui;
import com.google.common.collect.Iterables;
import com.google.common.collect.Lists;
import org.broad.igv.cli_plugin.Argument;
import org.broad.igv.sam.AlignmentTrack;
import org.broad.igv.track.DataTrack;
import org.broad.igv.track.FeatureTrack;
import org.broad.igv.track.Track;
import org.broad.igv.ui.IGV;
import org.broad.igv.variant.VariantTrack;
import javax.swing.*;
import java.awt.*;
import java.util.List;
/**
* @author Jacob Silterra
*/
public class TrackArgument extends ArgumentPanel {
public TrackArgument(Argument argument) {
initComponents();
super.initCommon(argument);
if (argument != null) {
List<Track> trackList = IGV.getInstance().getAllTracks();
Class clazz = getTrackClass(argument);
Iterable<Track> tracks = Iterables.filter(trackList, clazz);
List<Track> filteredTrackList = Lists.newArrayList(tracks);
if(filteredTrackList.size() == 0){
throw new IllegalStateException("No tracks found of appropriate type; make sure data is loaded");
}
trackComboBox.setModel(new DefaultComboBoxModel(filteredTrackList.toArray()));
trackComboBox.setRenderer(new TrackComboBoxRenderer());
}
}
private void initComponents() {
// JFormDesigner - Component initialization - DO NOT MODIFY //GEN-BEGIN:initComponents
// Generated using JFormDesigner non-commercial license
trackComboBox = new JComboBox();
//======== this ========
setLayout(new BoxLayout(this, BoxLayout.X_AXIS));
add(trackComboBox);
// JFormDesigner - End of component initialization //GEN-END:initComponents
}
@Override
public Track getValue() {
return (Track) trackComboBox.getSelectedItem();
}
// JFormDesigner - Variables declaration - DO NOT MODIFY //GEN-BEGIN:variables
// Generated using JFormDesigner non-commercial license
private JComboBox trackComboBox;
// JFormDesigner - End of variables declaration //GEN-END:variables
public static class TrackComboBoxRenderer extends DefaultListCellRenderer {
@Override
public Component getListCellRendererComponent(JList list, Object value, int index, boolean isSelected, boolean cellHasFocus) {
Track track = (Track) value;
String toShow = "No Tracks Found";
if(track != null){
toShow = track.getName();
}
return super.getListCellRendererComponent(list, toShow, index, isSelected, cellHasFocus);
}
}
public Class getTrackClass(Argument argument) {
switch (argument.getType()) {
case VARIANT_TRACK:
return VariantTrack.class;
case FEATURE_TRACK:
return FeatureTrack.class;
case ALIGNMENT_TRACK:
return AlignmentTrack.class;
case DATA_TRACK:
return DataTrack.class;
default:
throw new IllegalArgumentException("Argument does not specify a track type; specifies " + argument.getType());
}
}
}