Examples of uk.ac.cam.ch.wwmm.ptclib.scixml.SciXMLDocument.query()

        }
        File outDir = new File(sxDir, i + "");
        outDir.mkdir();
        File outFile = new File(outDir, "markedup.xml");
        new Serializer(new FileOutputStream(outFile)).write(sxd);
        Nodes n = sxd.query("//ne");
        for(int j=0;j<n.size();j++) {
          XOMTools.removeElementPreservingText((Element)n.get(j));
        }
        outFile = new File(outDir, "source.xml");
        new Serializer(new FileOutputStream(outFile)).write(sxd);

          response.getWriter().write("Paper added OK");
        } else {
          SciXMLDocument doc = SciXMLDocument.makeFromDoc(new Builder().build(markedup));
          if(request.getParameter("minConf") != null) {
            double minConf = Double.parseDouble(request.getParameter("minConf"));
            Nodes n = doc.query("//ne[@confidence]");
            for(int i=0;i<n.size();i++) {
              Element e = (Element)n.get(i);
              double conf = Double.parseDouble(e.getAttributeValue("confidence"));
              if(conf < minConf) {
                XOMTools.removeElementPreservingText(e);

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