Package uk.ac.bbsrc.tgac.qc.run

Examples of uk.ac.bbsrc.tgac.qc.run.ReportTable.toJSON()

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    try {
      rt = reports.getAverageValues(map);
      if (rt == null) {
        return null;
      }
      report.put("runSummary", JSONArray.fromObject(rt.toJSON()));
    }
    catch (SQLException e) {
      e.printStackTrace();
    }
    catch (IOException e) {
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          map.put(RunProperty.lane, Integer.toString(part.getPartitionNumber()));

          try {
            rt = reports.getAverageValues(map);
            if (rt != null) {
              partition.put("partitionSummary", JSONArray.fromObject(rt.toJSON()));
            }
          }
          catch (SQLException e) {
            e.printStackTrace();
          }
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                  map.remove(RunProperty.barcode);
                  try {
                    map.put(RunProperty.barcode, tb.getSequence());
                    rt = reports.getAverageValues(map);
                    if (rt != null) {
                      partition.put(tb.getSequence(), JSONArray.fromObject(rt.toJSON()));
                    }
                  }
                  catch (SQLException e) {
                    e.printStackTrace();
                  }
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    JSONObject partition = new JSONObject();
    try {
      rt = reports.getAverageValues(map);
      if (rt != null) {
        partition.put("partitionSummary", JSONArray.fromObject(rt.toJSON()));
      }
    }
    catch (SQLException e) {
      e.printStackTrace();
    }
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                  map.remove(RunProperty.barcode);
                  try {
                    map.put(RunProperty.barcode, tb.getSequence());
                    rt = reports.getAverageValues(map);
                    if (rt != null) {
                      partition.put(tb.getSequence(), JSONArray.fromObject(rt.toJSON()));
                    }
                  }
                  catch (SQLException e) {
                    e.printStackTrace();
                  }
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