Package ru.autosome.macroape.calculation.generalized

Examples of ru.autosome.macroape.calculation.generalized.CompareModelsCountsGiven.jaccard()

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  protected double calculateDistance(PWMWithThreshold first, PWMWithThreshold second) throws HashOverflowException {
    CompareModelsCountsGiven calc;
    CompareModelsCountsGiven.SimilarityInfo info;
    calc = calculator(first.pwm, second.pwm);

    info = calc.jaccard(first.roughThreshold, second.roughThreshold,
                        first.roughCount, second.roughCount);
    if (preciseRecalculationCutoff != null && info.similarity() > preciseRecalculationCutoff) {
      calc = calculator(first.pwm, second.pwm);
      info = calc.jaccard(first.preciseThreshold, second.preciseThreshold,
                          first.preciseCount, second.preciseCount);
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    info = calc.jaccard(first.roughThreshold, second.roughThreshold,
                        first.roughCount, second.roughCount);
    if (preciseRecalculationCutoff != null && info.similarity() > preciseRecalculationCutoff) {
      calc = calculator(first.pwm, second.pwm);
      info = calc.jaccard(first.preciseThreshold, second.preciseThreshold,
                          first.preciseCount, second.preciseCount);
    }
    return info.distance();
  }
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