Package ru.autosome.commons.importer

Examples of ru.autosome.commons.importer.DiPWMImporter.loadMotifCollection()

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        diCollection.add(DiPWM.fromPWM(monoPWM));
      }
      return diCollection;
    } else {
      DiPWMImporter importer = new DiPWMImporter(background, dataModel, effectiveCount, transpose);
      return importer.loadMotifCollection(path_to_collection_of_pwms);
    }
  }

  protected static ru.autosome.perfectosape.cli.generalized.MultiSNPScan from_arglist(ArrayList<String> argv) {
    MultiSNPScan result = new MultiSNPScan();
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        diCollection.add(DiPWM.fromPWM(monoPWM));
      }
      return diCollection;
    } else {
      DiPWMImporter importer = new DiPWMImporter(collectionBackground, dataModel, effectiveCount, collectionTranspose);
      return importer.loadMotifCollection(pathToCollectionOfPWMs);
    }
  }

  @Override
  protected DiPWM loadQueryMotif() {
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        pwmCollection.add(DiPWM.fromPWM(monoPWM));
      }
      return pwmCollection;
    } else {
      DiPWMImporter importer = new DiPWMImporter(background, dataModel, effectiveCount, transpose);
      return importer.loadMotifCollection(path_to_collection);
    }
  }

  @Override
  protected void initialize_defaults() {
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