Package org.openbel.framework.core.indexer

Examples of org.openbel.framework.core.indexer.JDBMNamespaceLookup.lookup()

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            final String fmt = "Namespace '%s' is not open.";
            final String msg = String.format(fmt, resourceLocation);
            throw new IndexingFailure(resourceLocation, msg);
        }

        String encoding = il.lookup(p.getValue());

        if (encoding == null) {
            String rl = ns.getResourceLocation();
            String pref = ns.getPrefix();
            throw new NamespaceSyntaxWarning(rl, pref, p.getValue());
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        JDBMNamespaceLookup il = openNamespaces.get(ns.getResourceLocation());
        if (il == null) {
            throw new IllegalStateException("namespace index is not open.");
        }

        String encoding = il.lookup(p.getValue());
        if (encoding == null) {
            throw new NamespaceSyntaxWarning(ns.getResourceLocation(),
                    ns.getPrefix(),
                    p.getValue());
        }
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            JDBMNamespaceLookup jdbmLookup =
                    new JDBMNamespaceLookup(indexPath.getAbsolutePath());
            jdbmLookup.open();

            assertEquals(1, jdbmLookup.getRecordCount());
            assertEquals(value, jdbmLookup.lookup("1"));

            jdbmLookup.close();
        } catch (Exception e) {
            e.printStackTrace();
            fail(e.getMessage());
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            JDBMNamespaceLookup jdbmLookup =
                    new JDBMNamespaceLookup(indexPath.getAbsolutePath());
            jdbmLookup.open();

            assertEquals(1, jdbmLookup.getRecordCount());
            assertNull(jdbmLookup.lookup("0"));

            jdbmLookup.close();
        } catch (Exception e) {
            e.printStackTrace();
            fail(e.getMessage());
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