Package org.obolibrary.oboformat.model

Examples of org.obolibrary.oboformat.model.OBODoc.check()

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    public List<Diff> roundTripOBODoc(@Nonnull OBODoc obodoc,
            boolean isExpectRoundtrip) throws Exception {
        OWLOntology oo = convert(obodoc);
        OBODoc obodoc2 = convert(oo);
        obodoc2.check();
        writeOBO(obodoc2);
        List<Diff> diffs = OBODocDiffer.getDiffs(obodoc, obodoc2);
        if (isExpectRoundtrip) {
            assertEquals("Expected no diffs but " + diffs, 0, diffs.size());
        }
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            boolean isExpectRoundtrip) throws IOException {
        OWLAPIOwl2Obo bridge = new OWLAPIOwl2Obo(
                OWLManager.createOWLOntologyManager());
        OBODoc obodoc = bridge.convert(oo);
        writeOBO(obodoc);
        obodoc.check();
        OWLOntology oo2 = convert(obodoc);
        writeOWL(oo2);
        boolean ok = compareOWLOntologiesPartial(oo, oo2, isExpectRoundtrip,
                bridge.getUntranslatableAxioms());
        return ok || !isExpectRoundtrip;
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