Package org.moltools.apps.probemaker.design

Examples of org.moltools.apps.probemaker.design.CandidateAnalysisModule.reset()

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    for (Iterator<CandidateAnalysisModule> i = project.getSettings().getArmModules().iterator(); i.hasNext(); ) {
      CandidateAnalysisModule m = i.next();
      if (m instanceof ProbeAnalysisModule)
      ((ProbeAnalysisModule) m).reset(pd,probes);
      else
      m.reset();
    }

    for (Iterator<CandidateAnalysisModule> i = project.getSettings().getCandidateModulesStage1().iterator(); i.hasNext(); ) {
      CandidateAnalysisModule m = i.next();
      if (m instanceof ProbeAnalysisModule)
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    for (Iterator<CandidateAnalysisModule> i = project.getSettings().getCandidateModulesStage1().iterator(); i.hasNext(); ) {
      CandidateAnalysisModule m = i.next();
      if (m instanceof ProbeAnalysisModule)
        ((ProbeAnalysisModule) m).reset(pd,probes);
      else
        m.reset();
    }

    for (Iterator<CandidateAnalysisModule> i = project.getSettings().getCandidateModulesStage2().iterator(); i.hasNext(); ) {
      CandidateAnalysisModule m = i.next();
      if (m instanceof ProbeAnalysisModule)
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    for (Iterator<CandidateAnalysisModule> i = project.getSettings().getCandidateModulesStage2().iterator(); i.hasNext(); ) {
      CandidateAnalysisModule m = i.next();
      if (m instanceof ProbeAnalysisModule)
        ((ProbeAnalysisModule) m).reset(pd,probes);
      else
        m.reset();
    }
      
    for (Iterator<Probe> pi = probes.iterator(); pi.hasNext(); ) {
      if (isAborted()) {
        return;
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    for (Iterator<CandidateAnalysisModule> i = project.getSettings().getArmModules().iterator(); i.hasNext(); ) {
      CandidateAnalysisModule m = i.next();
      if (m instanceof ProbeAnalysisModule)
      ((ProbeAnalysisModule) m).reset(pd,probes);
      else
      m.reset();
    }

    for (Iterator<CandidateAnalysisModule> i = project.getSettings().getCandidateModulesStage1().iterator(); i.hasNext(); ) {
      CandidateAnalysisModule m = i.next();
      if (m instanceof ProbeAnalysisModule)
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    for (Iterator<CandidateAnalysisModule> i = project.getSettings().getCandidateModulesStage1().iterator(); i.hasNext(); ) {
      CandidateAnalysisModule m = i.next();
      if (m instanceof ProbeAnalysisModule)
        ((ProbeAnalysisModule) m).reset(pd,probes);
      else
        m.reset();
    }

    for (Iterator<CandidateAnalysisModule> i = project.getSettings().getCandidateModulesStage2().iterator(); i.hasNext(); ) {
      CandidateAnalysisModule m = i.next();
      if (m instanceof ProbeAnalysisModule)
View Full Code Here
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    for (Iterator<CandidateAnalysisModule> i = project.getSettings().getCandidateModulesStage2().iterator(); i.hasNext(); ) {
      CandidateAnalysisModule m = i.next();
      if (m instanceof ProbeAnalysisModule)
        ((ProbeAnalysisModule) m).reset(pd,probes);
      else
        m.reset();
    }
      
    for (Iterator<Probe> pi = probes.iterator(); pi.hasNext(); ) {
      if (isAborted()) {
        return;
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    for (Iterator<CandidateAnalysisModule> i = project.getSettings().getArmModules().iterator(); i.hasNext(); ) {
      CandidateAnalysisModule m = i.next();
      if (m instanceof ProbeAnalysisModule)
      ((ProbeAnalysisModule) m).reset(pd,probes);
      else
      m.reset();
    }

    for (Iterator<CandidateAnalysisModule> i = project.getSettings().getCandidateModulesStage1().iterator(); i.hasNext(); ) {
      CandidateAnalysisModule m = i.next();
      if (m instanceof ProbeAnalysisModule)
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    for (Iterator<CandidateAnalysisModule> i = project.getSettings().getCandidateModulesStage1().iterator(); i.hasNext(); ) {
      CandidateAnalysisModule m = i.next();
      if (m instanceof ProbeAnalysisModule)
        ((ProbeAnalysisModule) m).reset(pd,probes);
      else
        m.reset();
    }

    for (Iterator<CandidateAnalysisModule> i = project.getSettings().getCandidateModulesStage2().iterator(); i.hasNext(); ) {
      CandidateAnalysisModule m = i.next();
      if (m instanceof ProbeAnalysisModule)
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    for (Iterator<CandidateAnalysisModule> i = project.getSettings().getCandidateModulesStage2().iterator(); i.hasNext(); ) {
      CandidateAnalysisModule m = i.next();
      if (m instanceof ProbeAnalysisModule)
        ((ProbeAnalysisModule) m).reset(pd,probes);
      else
        m.reset();
    }
      
    for (Iterator<Probe> pi = probes.iterator(); pi.hasNext(); ) {
      if (isAborted()) {
        return;
View Full Code Here
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