This is due to UDIG-1836 where it is noted that the default selection provided by a MapEditor is a MapImpl (and thus 90% of the time hitting delete will result in the map being removed).
The ProjectExplorer view and LayerView make use of their own delete action and thus are not effected here. @see org.eclipse.ui.IActionDelegate#run(org.eclipse.jface.action.IAction)
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