Package org.broadinstitute.gatk.utils.runtime

Examples of org.broadinstitute.gatk.utils.runtime.ProcessController.exec()

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            if (logger.isDebugEnabled()) {
                logger.debug("Executing:");
                for (String arg: cmd)
                    logger.debug("  " + arg);
            }
            int exitValue = controller.exec(processSettings).getExitValue();
            logger.debug("Result: " + exitValue);

            if (exitValue != 0)
                throw new RScriptExecutorException(
                        "RScript exited with " + exitValue +
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