Package org.broadinstitute.gatk.utils.collections

Examples of org.broadinstitute.gatk.utils.collections.CountSet.addAll()


                if (referenceWithinBoundaries.contains(v)) {
                    final CountSet previous = expectedRejoins.get(v);
                    if (previous == null)
                        expectedRejoins.put(v, depth.clone());
                    else
                        previous.addAll(depth);
                }
            } else {
                final CountSet depthPlusOne = depth.clone();
                depthPlusOne.incAll(1);
                final Set<MultiSampleEdge> nextEdges = backwards ? incomingEdgesOf(v) : outgoingEdgesOf(v);
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