Package org.broadinstitute.gatk.utils

Examples of org.broadinstitute.gatk.utils.GenomeLoc.merge()


            while ( gatkFeatures.peek() != null && gatkFeatures.peek().getLocation().getStart() == first.getStart() )
                myFeatures.add(gatkFeatures.poll());

            GenomeLoc loc = first.getLocation();
            for ( final GATKFeature feature : myFeatures )
                loc = loc.merge(feature.getLocation());

            return new RODRecordListImpl(name, myFeatures, loc); // is this safe?
        }

        @Override public void remove() { throw new IllegalStateException("GRRR"); }
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