Package org.bioinfo.ngs.qc.qualimap.process

Examples of org.bioinfo.ngs.qc.qualimap.process.RNASeqQCAnalysis.run()

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            String countsPath = settingsDlg.getCountsOutputPath();
            rnaSeqQCAnalysis.setCountsFilePath(countsPath);
        }

        try {
            rnaSeqQCAnalysis.run();
        } catch (Exception e) {
            JOptionPane.showMessageDialog(settingsDlg, "Failed to analyze counts data. " + e.getMessage(),
                    settingsDlg.getTitle(), JOptionPane.ERROR_MESSAGE);
            settingsDlg.setUiEnabled(true);
            return;
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        RNASeqQCAnalysis rnaSeqQCAnalysis = new RNASeqQCAnalysis(resultManager, computeCountsTask);
        if (countsFile.length() > 0) {
            rnaSeqQCAnalysis.setCountsFilePath(countsFile);
        }

        rnaSeqQCAnalysis.run();

        exportResult(resultManager);


    }
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