Package org.bioinfo.ngs.qc.qualimap.process

Examples of org.bioinfo.ngs.qc.qualimap.process.ComputeCountsTask.run()

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                }
            }


            try {
                computeCountsTask.run();
                Map<String,Double> readCounts = computeCountsTask.getReadCounts();

                /*List<String> geneNames = asSortedList(readCounts.keySet());

                for (String key : geneNames) {
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                new PrintWriter(new OutputStreamWriter(System.out)) :
                new PrintWriter(new FileWriter(outFile));


        try {
            computeCountsTask.run();

            Map<String,Double> counts = computeCountsTask.getReadCounts();
            for (Map.Entry<String,Double> entry: counts.entrySet()) {
                long roundedValue = entry.getValue().longValue();
                String str = entry.getKey() + "\t" + roundedValue;
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                        }
                    });


                    try {
                        computeCountsTask.run();

                        PrintWriter outWriter = new PrintWriter(new FileWriter(outputPathField.getText()));

                        Map<String,Double> counts = computeCountsTask.getReadCounts();
                        for (Map.Entry<String,Double> entry: counts.entrySet()) {
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