Examples of net.sourceforge.align.filter.aligner.UnifyAligner.apply()

net.sourceforge.align.filter.aligner.UnifyAligner.apply()

Creates alignment list in which numbers of source and target segments in subsequent alignments are the same as in reference alignments (but the segment contents come from input alignment list). Also copies scores from reference alignment list to output alignment list. @param alignmentList input alignment list @return alignment list unified with reference alignment @throws AlignmentImpossibleException when numbers of source or targetsegments in input alignment list are different than on reference alignment list

  private List<Alignment> unifyAlignments(List<Alignment> alignmentList, 
      List<Alignment> referenceAlignmentList) {
    
    Filter filter = new UnifyAligner(referenceAlignmentList);
    
    return filter.apply(alignmentList);
    
  }
  
  
}

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