Package net.sf.picard.util

Examples of net.sf.picard.util.Interval.intersects()


            }*/

            if (featureIntervalMap.containsKey(featureName)) {
                Collection<Interval> intervals = featureIntervalMap.get(featureName);
                for (Interval interval: intervals ) {
                    if (newInterval.intersects(interval) || newInterval.abuts(interval)) {
                        if (newInterval.getStart() == interval.getStart() && newInterval.getEnd() == interval.getEnd()) {
                            // equal interval is already present for this feature
                            return;
                        }
                        newInterval = concatenateIntervals(newInterval, interval);
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