Package kmer

Examples of kmer.ProteinKmerBitFeatureVector.printByteVector()

69
70
71
72
73
74
75
76
77
78
79
    testBytes[0] = (byte) 0x1;
   
    vector.parseKmersFromSequence(sequence);
    byte[] bytes = vector.getFeatureVector();

    System.out.println(vector.printByteVector());
    System.out.println(printByteVector(testBytes));
   
    assertTrue(equalBytes(bytes, testBytes));
   
    sequence = "AR";
View Full Code Here
82
83
84
85
86
87
88
89
90
91
92
    vector.parseKmersFromSequence(sequence);
    bytes = vector.getFeatureVector();
   
    testBytes[0] = (byte) 0x2;
   
    System.out.println(vector.printByteVector());
    System.out.println(printByteVector(testBytes));
   
    assertTrue(equalBytes(bytes, testBytes));
   
    sequence = "AV";
View Full Code Here
96
97
98
99
100
101
102
103
104
105
106
    bytes = vector.getFeatureVector();
   
    testBytes[0] = (byte) 0x0;
    testBytes[2] = (byte) 0x8;
   
    System.out.println(vector.printByteVector());
    System.out.println(printByteVector(testBytes));
   
    assertTrue(equalBytes(bytes, testBytes));
   
    sequence = "VV";
View Full Code Here
111
112
113
114
115
116
117
118
119
120
121
   
    testBytes[0] = (byte) 0x0;
    testBytes[2] = (byte) 0x0;
    testBytes[49] = (byte) 0x80;
   
    System.out.println(vector.printByteVector());
    System.out.println(printByteVector(testBytes));
   
    assertTrue(equalBytes(bytes, testBytes));
   
    // 32, b = -65
View Full Code Here
72
73
74
75
76
77
78
79
80
81
82
     
      featureVector.parseKmersFromSequence(line.substring(spaceIndex + 1).trim());
     
     
      LOG.info(featureVector.getFeatureVector().length);
      LOG.info(featureVector.printByteVector());
      LOG.info(featureVector.printKmers());
     
      context.write(seqId, new BytesWritable(featureVector.getFeatureVector()));
    }
  }
View Full Code Here
TOP
Copyright © 2018 www.massapi.com. All rights reserved.
All source code are property of their respective owners. Java is a trademark of Sun Microsystems, Inc and owned by ORACLE Inc. Contact coftware#gmail.com.