Package jSimMacs.logic.handler

Examples of jSimMacs.logic.handler.SSHDataHandler.createSession()

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  }

  private Session startProcess(List<String> commands) throws IOException {
    String command = ToolBox.createCommandString(commands);
    SSHDataHandler dataHandler = getHandler();
    Session sess = dataHandler.createSession();
    if (sess == null)
      throw new IOException("Session corrupt");
    sess.execCommand(command);
    return sess;
  }
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  public void startGromacsProgram(List<String> commands,
      OutputStream outStream, boolean interactive, OutputStream helperStream) throws IOException {
    SSHDataHandler dataHandler = getHandler();
    if (commands.get(0).equals(GromacsConstants.MDRUN)
        && remoteProject.isUseMPILib()) {
      Session mpiSess = dataHandler.createSession();
      mpiSess.execCommand(remoteProject.getMpiLib());
      outputSession(mpiSess);
      // outputStdout(mpiSess.getStdout());
      // outputStdout(mpiSess.getStderr());
      mpiSess.close();
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      commands.add(0, GromacsConstants.MPIRUNOPTION);
      commands.add(0, GromacsConstants.MPIRUN);
    }
    String command = ToolBox.createCommandString(commands);

    Session sess = dataHandler.createSession();
    SSHGromacsThread gromacsThread = new SSHGromacsThread(command, sess,
        outStream, interactive, helperStream);
    if (interactive)
      gromacsThread
          .setInputString(inputStringForInteractiveThread(commands
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      boolean interactive, OutputStream helperStream) throws IOException {
    SSHDataHandler dataHandler = getHandler();
    String gromacsCommand = command.substring(0, command.indexOf(" "));
    if (gromacsCommand.equals(GromacsConstants.MDRUN)
        && remoteProject.isUseMPILib()) {
      Session mpiSess = dataHandler.createSession();
      mpiSess.execCommand(remoteProject.getMpiLib());
      outputSession(mpiSess);
      // outputStdout(mpiSess.getStdout());
      // outputStdout(mpiSess.getStderr());
      mpiSess.close();
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          + GromacsConstants.MPIRUNOPTION + " " + remoteProject.getNp()
          + " " + command;
      command = mpiCommand;
    }

    Session sess = dataHandler.createSession();
    SSHGromacsThread gromacsThread = new SSHGromacsThread(command, sess,
        outStream, interactive, helperStream);
    if (interactive)
      gromacsThread
          .setInputString(inputStringForInteractiveThread(gromacsCommand));
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