Package it.unimi.dsi.lang

Examples of it.unimi.dsi.lang.MutableString.replace()

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    if ( documentSequence instanceof DocumentCollection ) progressLogger.expectedUpdates = ((DocumentCollection)documentSequence).size();
    progressLogger.start( "Scanning..." );
   
    while( ( document = documentIterator.nextDocument() ) != null ) {
      if ( uriStream != null ) {
        s.replace( document.uri() );
        s.replace( LINE_TERMINATORS, SPACES );
        s.writeUTF8( uriStream );
        uriStream.write( '\n' );
      }
      if ( titleStream != null ) {
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    progressLogger.start( "Scanning..." );
   
    while( ( document = documentIterator.nextDocument() ) != null ) {
      if ( uriStream != null ) {
        s.replace( document.uri() );
        s.replace( LINE_TERMINATORS, SPACES );
        s.writeUTF8( uriStream );
        uriStream.write( '\n' );
      }
      if ( titleStream != null ) {
        s.replace( document.title() );
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        s.replace( LINE_TERMINATORS, SPACES );
        s.writeUTF8( uriStream );
        uriStream.write( '\n' );
      }
      if ( titleStream != null ) {
        s.replace( document.title() );
        s.replace( LINE_TERMINATORS, SPACES );
        s.writeUTF8( titleStream );
        titleStream.write( '\n' );
      }
      progressLogger.lightUpdate();
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        s.writeUTF8( uriStream );
        uriStream.write( '\n' );
      }
      if ( titleStream != null ) {
        s.replace( document.title() );
        s.replace( LINE_TERMINATORS, SPACES );
        s.writeUTF8( titleStream );
        titleStream.write( '\n' );
      }
      progressLogger.lightUpdate();
    }
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        final MutableString id = new MutableString(sequence);
        int referenceIndex = targetIdentifiers.getIndex(id);
        if (referenceIndex == -1) {
            // try again removing a chr prefix:
            referenceIndex = targetIdentifiers.getIndex(id.replace("chr", ""));
        }
        try {
            if (referenceIndex == -1) {
                // the reference could not be found in the Goby alignment, probably a wrong reference choice. Not sure how
                // to inform the end user, but we send no results here:
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    public String getValueString(double position, WindowFunction windowFunction) {
        //  //LOG.info("getValueString");
        MutableString buffer = new MutableString();

        buffer.append(entry.toString());
        buffer.replace("\n", "<br>");

        if (this.isPaired()) {
            buffer.append("----------------------" + "<br>");
            buffer.append("Mate start = " + getMate().positionString() + "<br>");
            buffer.append("Mate is mapped = " + (getMate().isMapped() ? "yes" : "no") + "<br>");
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      }

      private void process() {
        curText.trim();
        curText.replace('\n', ' ');
        curText.squeezeSpaces(false);

        if (curElement == TRECParsingFactory.ELEMENT_TITLE) {
          removePrefix("Topic: ", curText);
          if (quoteCommas) {
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            }

            private void process() {
                curText.trim();
                curText.replace('\n', ' ');
                curText.squeezeSpaces(false);

                if (curElement == ELEMENT_TITLE) {
                    removePrefix("Topic: ", curText);
                    if (quoteCommas) {
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