Package it.unimi.dsi.fastutil.ints

Examples of it.unimi.dsi.fastutil.ints.IntArrayList.ensureCapacity()

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        final int overlapEnd = overlap.getStop();
        for (int s = 0; s < sampleCount; s++) {
            buffer.clear();
            final GATKSAMRecord[] sampleReads = readsBySampleIndex[s];
            final int sampleReadCount = sampleReads.length;
            buffer.ensureCapacity(sampleReadCount);
            for (int r = 0; r < sampleReadCount; r++)
                if (unclippedReadOverlapsRegion(sampleReads[r], referenceIndex, overlapStart, overlapEnd))
                    buffer.add(r);
            result[s] = buffer.toIntArray();
        }
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            final double fraction = fractionDouble;
            if (Double.isNaN(fraction) || fraction <= 0.0)
                continue;
            if (fraction >= 1.0) {
                final int sampleReadCount = readsBySampleIndex[s].length;
                readsToRemove.ensureCapacity(sampleReadCount);
                for (int r = 0; r < sampleReadCount; r++)
                    readsToRemove.add(r);
                removeSampleReads(s,readsToRemove,alleleCount);
                readsToRemove.clear();
            }
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