Package htsjdk.variant.variantcontext

Examples of htsjdk.variant.variantcontext.GenotypeBuilder.make()

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        gb.PL(block.getMinPLs());

        // This annotation is no longer standard
        //gb.attribute(MIN_GQ_FORMAT_FIELD, block.getMinGQ());

        return vcb.genotypes(gb.make()).make();
    }

    /**
     * Helper function to create a new HomRefBlock from a variant context and current genotype
     *
 
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                gtBuilder.filter(PASS_FILTER);
            }
            else {
                gtBuilder.filters(filters);
            }
            newGenotypes.add(gtBuilder.make());
        }
        builder.genotypes(newGenotypes);

        return builder.make();
    }
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