Package htsjdk.samtools.util

Examples of htsjdk.samtools.util.FormatUtil.parseInt()

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                    Assert.assertEquals(parts, testFile1Data[index]);
                }
            }
            else {
                Assert.assertEquals(testFile1Data[index][0], format.parseDouble(parts[0]));
                Assert.assertEquals(testFile1Data[index][1], format.parseInt(parts[1]));
                Assert.assertEquals(testFile1Data[index][2], format.parseInt(parts[2]));
                Assert.assertEquals(testFile1Data[index][3], format.parseDouble(parts[3]));
            }
            index++;
        }
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                }
            }
            else {
                Assert.assertEquals(testFile1Data[index][0], format.parseDouble(parts[0]));
                Assert.assertEquals(testFile1Data[index][1], format.parseInt(parts[1]));
                Assert.assertEquals(testFile1Data[index][2], format.parseInt(parts[2]));
                Assert.assertEquals(testFile1Data[index][3], format.parseDouble(parts[3]));
            }
            index++;
        }
    }
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                    Assert.assertEquals(parts, testFile1Data[indexIntoTestData]);
                }
            }
            else {
                Assert.assertEquals(testFile1Data[indexIntoTestData][0], format.parseDouble(parts[0]));
                Assert.assertEquals(testFile1Data[indexIntoTestData][1], format.parseInt(parts[1]));
                Assert.assertEquals(testFile1Data[indexIntoTestData][2], format.parseInt(parts[2]));
                Assert.assertEquals(testFile1Data[indexIntoTestData][3], format.parseDouble(parts[3]));
            }
            index++;
        }
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                }
            }
            else {
                Assert.assertEquals(testFile1Data[indexIntoTestData][0], format.parseDouble(parts[0]));
                Assert.assertEquals(testFile1Data[indexIntoTestData][1], format.parseInt(parts[1]));
                Assert.assertEquals(testFile1Data[indexIntoTestData][2], format.parseInt(parts[2]));
                Assert.assertEquals(testFile1Data[indexIntoTestData][3], format.parseDouble(parts[3]));
            }
            index++;
        }
    }
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