Package htsjdk.samtools.seekablestream

Examples of htsjdk.samtools.seekablestream.SeekableStream.readFully()

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        try {
            ss = IGVSeekableStreamFactory.getInstance().getStreamFor(path);
            int nBytes = (int) (posEnd - posStart);
            byte[] bytes = new byte[nBytes];
            ss.seek(posStart);
            ss.readFully(bytes);
            return bytes;
        } finally {
            if (ss != null) {
                ss.close();
            }
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                        int l = (int) Math.min(1000, HttpUtils.getInstance().getContentLength(url));
                        if (l > 100) {

                            byte[] firstBytes = new byte[l];
                            str = new IGVSeekableHTTPStream(url);
                            str.readFully(firstBytes);

                            int end = firstBytes.length;
                            int start = end - 100;
                            str.seek(start);
                            int len = end - start;
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