Package htsjdk.samtools

Examples of htsjdk.samtools.TextCigarCodec.decode()

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    public int getReferenceLength(String cigarString) {
               // Use htsjdk class for now
        TextCigarCodec codec = new TextCigarCodec();
        Cigar cigar = codec.decode(cigarString);
        return cigar.getReferenceLength();
    }

    /*
    "id": "",
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