Package htsjdk.samtools

Examples of htsjdk.samtools.SAMFileReader.enableCrcChecking()

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            final SAMFileReader samReader = new SAMFileReader(INPUT);
            if (!samReader.isBinary()) VALIDATE_INDEX=false;
            if (VALIDATE_INDEX){
                samReader.enableIndexCaching(true);
            }
            samReader.enableCrcChecking(true);

            final SamFileValidator validator = new SamFileValidator(out, MAX_OPEN_TEMP_FILES);
            validator.setErrorsToIgnore(IGNORE);

            if (IGNORE_WARNINGS) {
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