Package fork.lib.bio.anno.genomic.region

Examples of fork.lib.bio.anno.genomic.region.GenomicRegionsMerger.param()

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    File d= new File(dir+"/data/human_magnus/h2az/macs");
    File od= new File(d+"/merge");
    File out= new File(od+"/merge.bed");
   
    GenomicRegionsMerger mer= new GenomicRegionsMerger();
    mer.param().gap= 1000;
    File[] fs= d.listFiles();
    for( int i=0; i<fs.length; i++ ){
        File f= fs[i];
        if(FileName.getExt(f).equals("bed") && !f.getName().equals(out.getName()) ){
            System.out.println(f);
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    File dir= Dirs.getFile("dir");
    File d= new File(dir+"/data/human_magnus/h2az/norm/peak/novel");
    File out= new File(d+"/merge.bed");
   
    GenomicRegionsMerger mer= new GenomicRegionsMerger();
    mer.param().gap= 1000;
    File[] fs= d.listFiles();
    for( int i=0; i<fs.length; i++ ){
        File f= fs[i];
        if(FileName.getExt(f).equals("bed") && !f.getName().equals(out.getName()) ){
            System.out.println(f);
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    File dir= Dirs.getFile("dir");
    File d= new File(dir+"/data/human_magnus/h2az/norm/peak/novel");
    File out= new File(d+"/merge.bed");
   
    GenomicRegionsMerger mer= new GenomicRegionsMerger();
    mer.param().gap= 1000;
    File[] fs= d.listFiles();
    for( int i=0; i<fs.length; i++ ){
        File f= fs[i];
        if(FileName.getExt(f).equals("bed") && !f.getName().equals(out.getName()) ){
            System.out.println(f);
View Full Code Here
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    File d= new File(dir+"/data/human_magnus/h2az/macs");
    File od= new File(d+"/merge");
    File out= new File(od+"/merge.bed");
   
    GenomicRegionsMerger mer= new GenomicRegionsMerger();
    mer.param().gap= 500;
    File[] fs= d.listFiles();
    for( int i=0; i<fs.length; i++ ){
        File f= fs[i];
        if(FileName.getExt(f).equals("bed") && !f.getName().equals(out.getName()) ){
            System.out.println(f);
View Full Code Here
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