Package fork.lib.bio.anno.genomic

Examples of fork.lib.bio.anno.genomic.LandscapeComparatorBuffer.writeToFile()

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            public double newValue(double v, double refv) {
                return new Double( (double)Math.round( (v- refv) * 1000)/1000  );
            }
        };
    String tag= FileName.getBaseName(f);
    lc.writeToFile(out, "diff"+tag);
}


public static void main(String[] args) throws Exception { //debug
    File dir= Dirs.getFile("dir");
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                return new Double( (double)Math.round(v/refv * 1000)/1000  );
            }
        };
    String tag= FileName.getBaseName(f)+"_lee2007";
    System.out.println("write ratio to: "+out);
    lc.writeToFile(out, "ratio_"+tag);
}
   
   
   
   
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                    ret=0;
                }
                return ret;
            }
        };
    lc.writeToFile(f, tit);
}


public static void normalise(LandscapeBuilder lb, File of, String tit, double seqDepth) throws Exception{
    new LandscapeTransformer(lb).selectLength(100, Double.POSITIVE_INFINITY);
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                return new Double( (double)Math.round(v/refv * 1000)/1000  );
            }
        };
    String tag= FileName.getBaseName(f);
    System.out.println("write ratio to: "+out);
    lc.writeToFile(out, "ratio"+tag);
}



   
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